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Fact and Task Oriented System for Genome Assembly and Annotation

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Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 3594))

Abstract

We present a preliminary description and results of a system to help the curation of genome assembly and annotation. Standard tools are used for these tasks, and our methodology focuses on user guidance, data visualization and integration, and data browsing aspects.

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References

  1. Departamento de Bioquímica, Instituto de Química, University of Sao Paulo, http://www2.iq.usp.br/bioquimica/

  2. Extensible Markup Language (XML) 1.0, 3rd edn. (2004), http://www.w3.org/TR/2004/REC-xml-20040204

  3. Green, P.: Phrap: phragment assembly program, http://www.phrap.org

  4. Laboratory for Bioinformatics (LBI), Institute of Computing, University of Campinas, http://www.lbi.ic.unicamp.br

  5. Laboratório de Bioquímica e Biologia Molecular (LBM), UNESP, http://www.lbm.fcav.unesp.br/

  6. Setubal, J., Werneck, R.: A program for building contig scaffolds in double-barreled shotgun genome sequencing. Technical Report IC-01-05, Institute of Computing, Unicamp (2001)

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© 2005 Springer-Verlag Berlin Heidelberg

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Digiampietri, L.A. et al. (2005). Fact and Task Oriented System for Genome Assembly and Annotation. In: Setubal, J.C., Verjovski-Almeida, S. (eds) Advances in Bioinformatics and Computational Biology. BSB 2005. Lecture Notes in Computer Science(), vol 3594. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11532323_32

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  • DOI: https://doi.org/10.1007/11532323_32

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-28008-8

  • Online ISBN: 978-3-540-31861-3

  • eBook Packages: Computer ScienceComputer Science (R0)

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