Abstract
In general, the interactions between proteins are fundamental to a broad area of biological functions. In this paper, we try to predict protein-protein interactions in parallel on a 12-node PC-cluster using domains of a protein. For this, we use a hydrophobicity among protein’s amino acid’s physicochemical feature and a support vector machine (SVM) among machine learning techniques. According to the experiments, we get approximately 60% average accuracy with 5 trials and we obtained an average speed-up of 5.11 with a 12-node cluster using a proximal SVM.
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Chung, Y., Cho, SY., Shin, S.Y. (2005). Parallel Prediction of Protein-Protein Interactions Using Proximal SVM. In: Ślęzak, D., Yao, J., Peters, J.F., Ziarko, W., Hu, X. (eds) Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing. RSFDGrC 2005. Lecture Notes in Computer Science(), vol 3642. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11548706_45
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DOI: https://doi.org/10.1007/11548706_45
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-28660-8
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