Skip to main content

Spatial and Temporal Analysis for Optical Imaging Data Using CWT and tICA

  • Conference paper

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 3765))

Abstract

In this paper a novel temporal-spatial analysis procedure for optical imaging (OI) data of single trail is proposed which exploits the continuous wavelet transform (CWT) to detect the activated voxels of cortex and exploits temporal independent component analysis (tICA) to extract the underlying independent sources whose number is determined by Bayesian information criterion. The neural response signals and the V-signals are picked out by investigating the temporal architecture of the independent sources given by tICA. Simulated data is generated to test the validity of the procedure and then the procedure was applied to two sets of OI data of single trail collected from the rats’ HP area. The neural response signals together with the pulse-induced and the 0.1Hz fluctuation signals are extracted from data successfully. The procedure we proposed is a valuable technique for researchers to investigate the temporal and spatial architectures of cortical functional mapping.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Grinvald, A., Frostig, R.D., et al.: Optical Imaging of Neural Activity. Physiol Rev. 68, 1285–1365 (1988)

    Google Scholar 

  • Bonhoeffer, T., Grinvald, A., et al.: The Layout of Iso-orientation Domains in Area 18 of Cat Visual Cortex: Optical Imaging Reveals a Pinwheel-like Organization. J. Neurosci. 13, 4157–4180 (1993)

    Google Scholar 

  • Stetter, M., Schiebl, I., et al.: Principal Component Analysis and Blind Separation of Sources for Optical Imaging of Intrinsic Signals. NeuroImage 11, 482–490 (2000)

    Article  Google Scholar 

  • McKeown, M.J., Sejnowski, T.J., et al.: Independent Component Analysis of fMRI Data: Examining the Assumptions. Human Brain Mapping 6, 368–372 (1998)

    Article  Google Scholar 

  • McKeown, M.J., Makeig, L., et al.: Analysis of fMRI Data by Blind Separation into Independent Spatial Components. Human Brain Mapping 6, 160–188 (1998)

    Article  Google Scholar 

  • Calhoun, V.: Spatial and Temporal Independent Component Analysis of Functional MRI Data Containing a Pair of Task-related Waveforms. Human Brain Mapping 13, 43–53 (2001)

    Article  Google Scholar 

  • Stone, J.V., Porrill, J., et al.: Spatial, Temporal and Spatiotemporal Independent Component Analysis of fMRI Data. In: Proc. Leeds Statistical Research Workshop, Leeds, England (1999)

    Google Scholar 

  • Desco, M., Hernabdez, J.A., et al.: Multiresolution Analysis in fMRI: Sensitivity and Specificity in the Detection of Brain Activation. Human Brain Mapping 14, 16–27 (2001)

    Article  Google Scholar 

  • Brammer, M.J.: Multidimensional Wavelet Analysis of Functional Magnetic Resonance Images. Human Brain Mapping 6, 378–382 (1998)

    Article  Google Scholar 

  • Ruttimann, U.E., Unser, M., et al.: Statistical Analysis of Functional MRI Data in the Wavelet Domain. IEEE Transactions on Medical Imaging 17(2), 142–154 (1998)

    Article  Google Scholar 

  • Mayhew, J., Hu, D.W., et al.: An Evaluation of Linear Model Analysis Techniques for Processing Images of Microcirculation Activity. NeuroImage 7, 49–71 (1998)

    Article  Google Scholar 

  • Mayhew, J., Askew, S., et al.: Cerebral Vasomotion:0.1-Hz Oscillation in Reflected Light Imaging of Neural Activity. NeuroImage 4, 183–193 (1996)

    Article  Google Scholar 

  • Kleinfeld, D., Mitra, P., et al.: Fluctuations and Stimulus-induced Changes in Blood Flow Observed in Individual Capillaries in Layers 2 through 4 of Rat Neocortex. Proc. Natl. Acad. Sci. USA 95, 15741–15746 (1998)

    Article  Google Scholar 

  • Kiviniemi, V., Jauhiainen, J., et al.: Slow Vasomotor Fluctuation in fMRI of Anesthetized Child Brain. Magnetic Resonance in Medicine 44, 373–378 (2000)

    Article  Google Scholar 

  • Kiviniemi, V., Heikki, J., et al.: Independent Component Analysis of Nondeterministic fMRI Signal Sources. NeuroImage 19, 253–260 (2003)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2005 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Liu, Y. et al. (2005). Spatial and Temporal Analysis for Optical Imaging Data Using CWT and tICA. In: Liu, Y., Jiang, T., Zhang, C. (eds) Computer Vision for Biomedical Image Applications. CVBIA 2005. Lecture Notes in Computer Science, vol 3765. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11569541_51

Download citation

  • DOI: https://doi.org/10.1007/11569541_51

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-29411-5

  • Online ISBN: 978-3-540-32125-5

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics