Abstract
Modern pharmacology, combining pharmacokinetic, pharmacodynamic, and pharmacogenomic data, is dealing with high dimensional, nonlinear, stiff systems. Mathematical modeling of these systems is very difficult, but important for understanding them. At least as important is to adequately control them through inputs – drugs’ dosage regimens. Genetic programming (GP) and neural networks (NN) are alternative techniques for these tasks. We use GP to automatically write the model structure in C++ and optimize the model’s constants. This gives insights into the subjacent molecular mechanisms. We also show that NN feedback linearization (FBL) can adequately control these systems, with or without a mathematical model. The drug dosage regimen will determine the output of the system to track very well a therapeutic objective. To our knowledge, this is the first time when a very large class of complex pharmacological problems are formulated and solved in terms of GP modeling and NN modeling and control.
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References
Berrar, D.P., Dubitzky, W., Boston, G.M. (eds.): A Practical Approach to Microarray Data Analysis. Kluwer Academic Publisher, Dordrecht (2003)
Koza, J.R.: Genetic Programming: On the Programming of Computers by Means of Natural Selection. MIT Press, Cambridge (1992)
Bishop, C.M.: Neural Networks for Pattern Recognition. Oxford University Press, Oxford (1995)
Garces, F., Becerra, V.M., Kambhampati, C., Warwick, K.: Strategies for feedback linearisation: a dynamic neural network approach. In: Advances in Industrial Control, London. Springer series (2003)
Floares, A., Floares, C., Cucu, M., Lazar, L.: Adaptive Neural Networks Control of Drug Dosage Regimens in Cancer Chemotherapy. In: Proceedings of the IJCNN 2003, Portland, July 20-24, pp. 154–159 (2003)
Mager, D.E., Wyska, E., Jusko, W.J.: Diversity of Mechanism-Based Pharmacodynamic Models. Drug Metab. Dispos. 31, 510–518 (2003)
Jin, J.J., Almon, R.R., Dubois, D.C., Jusko, W.J.: Modeling of Corticoids Pharmacogenomics in Rat Liver Using Gene Microarrays. J. Pharmacol. Exp. Ther. 307, 93–109 (2003)
Banzhaf, W., Nordin, P., Keller, R.E., Francone, F.D.: Genetic Programming: An Introduction: On the Automatic Evolution of Computer Programs and Its Applications. Morgan Kaufmann, San Francisco (1997)
Floares, A.: Feedback Linearization Using Neural Networks Applied to Advanced Pharmacodynamic and Pharmacogenomic Systems. In: Proceedings of the IJCNN 2005, Montreal Canada, July 31-August 4 (2005)
Nrgaard, M.: Neural Network Based System Identification toolbox, Version 2. Technical Report 00-E-891, Department of Automation Technical University of Denmark January 23 (2000)
Narendra, K.S., Mukhopadhyay, S.: Adaptive Control Using Neural Networks and Approximate Models. IEEE Transactions on Neural Networks 8, 475–485 (1997)
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Floares, A. (2006). Genetic Programming and Neural Networks Feedback Linearization for Modeling and Controlling Complex Pharmacogenomic Systems. In: Bloch, I., Petrosino, A., Tettamanzi, A.G.B. (eds) Fuzzy Logic and Applications. WILF 2005. Lecture Notes in Computer Science(), vol 3849. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11676935_22
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DOI: https://doi.org/10.1007/11676935_22
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-32529-1
Online ISBN: 978-3-540-32530-7
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