Skip to main content

Collaborative Multidiscipline/Multiscale Analysis, Modeling, Simulation and Integration in Complex Systems: System Biology

  • Conference paper
Computational Science and Its Applications - ICCSA 2006 (ICCSA 2006)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 3980))

Included in the following conference series:

Abstract

Analysis, Modeling and Integration of Complex Systems are difficult. Collaboration among dissimilar disciplines is difficult. But, integrated interdisciplinary collaboration is essential in making sense of complex systems. This creates a dilemma with complex systems at the end of one horn and interdisciplinary collaboration at the other. There is another wrinkle, combining the conceptual spaces at the ends of the horns makes each much more difficult.

Rather than trying to pass between the horns of this dilemma, we weave a semantic unification space between them. This does more than ironing out the wrinkle; the threads of common image schemas, cognitive metaphors and conceptual interfaces form a mesh between the organizations of each problem, making the combined problem easier that either is separately. This paper presents a naturally valid, both discipline specific and discipline integrating, framework and a new foundationsl semantic mechanism for making multidisciplinary sense of complex systems

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Johnson, M.: The Body In The Mind: Bodily Basis Of Meaning, Imagination, And Reason. University of Chicago press (1987)

    Google Scholar 

  • Lakoff, G., Johnson, M.: Philosophy In: The Flesh-The Embodied Mind And Its Challenge To Western Thought. Basic Books, New York

    Google Scholar 

  • Gibson, J.: Ecological Visual Perception. Lawrencee Erlbaum Associates, Hillsdale (1986)

    Google Scholar 

  • Land, E.: The Retinex Theory Of Colour Vision. Proc. R. Instn. G. B. 47, 23–58 (1974)

    Google Scholar 

  • Zeki, S.: A Vision Of The Brain. Blackwell Scientific Publications, Malden (1993)

    Google Scholar 

  • Mandler, J.M.: The Foundations of Mind: Origins of Conceptual Thought. Oxford University Press, Oxford (2004)

    Google Scholar 

  • Lakoff, G., Johnson, M.: Metaphors We Live By. University Of Chicago Press, Chicago (1980)

    Google Scholar 

  • Fauconnier, G., Turner, M.: The Way We Think: Conceptual Blending And The Mind’s Hidden Complexities. Basic Books, New York (2002)

    Google Scholar 

  • Collins, J.: Integrating synthetic biology and systems biology ICSB 2005 (2005)

    Google Scholar 

  • Harel, D.: Comprehensive and realistic modeling of biological systems: what, how and why ICSB 2005 (2005)

    Google Scholar 

  • Paton, N., et al.: Conceptual modelling of genomic information bioinformatics  16(6) (2000)

    Google Scholar 

  • Bult, C.: Curated Ontologies and Semantic Integration. In: BIBE 2000 (2000)

    Google Scholar 

  • Hill, D.: An Introduction to the Gene Ontology. In: GORECOMB 2005, Cambridge MA (2005)

    Google Scholar 

  • Wheeler, T., Dolan, M.: Support for Interdisciplinary Conceptual Model Blending. In: Intl. Conf. Intelligent User interfaces (October 2001)

    Google Scholar 

  • Philippi, S., Kohler, J.: Using XML technology for the ontology-based semantic integration of life science databases. IEEE Trans. Inf. Technol. Biomed. 8(2) (June 2004)

    Google Scholar 

  • Davidson, S.: Bioklesli: A Digital Library For Biomedical Research. Intl. J. Digit. Lib. 1 (January 1997)

    Google Scholar 

  • Wiederhold, G.: Mediators In The Architecture Of Future Information Systems. Published In IEEE Computer (March 1992); Bloom, M., Peterson, M., Nadel, L., Garrett, M.: language and space. Mit press, Cambridge (1996)

    Google Scholar 

  • Frank, A.U., Mark, D.M. (eds.): Cognitive and Linguistic Aspects of Geographic Space. NATO ASI Series D, vol. 63. Kluwer Academic Publishers, Dordrecht (1991)

    Google Scholar 

  • Frank, A.U., Mark, D.M. (eds.): Cognitive and Linguistic Aspects of Geographic Space. NATO ASI Series D, vol. 63. Kluwer Academic Publishers, Dordrecht (1991)

    Google Scholar 

  • Worboys, M.F., Duckham, M.: GIS: A Computing Perspective, 2nd edn. CRC Press, Boca Raton (2004) ISBN: 0415283752

    Google Scholar 

  • Leibe, B., Schiele, B.: Analyzing Appearance and Contour Based Methods for Object Categorization. In: Proc. IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2003), Madison, USA (June 2003)

    Google Scholar 

  • Espinosa, J.A., Kraut, R.E., Slaughter, S.A., Lerch, J.F., Herbsleb, J.D., Mockus, A.: Shared Mental Models, familiarity, and coordination: A multi-method study of distributed software teams. In: International Conference in Information Systems, Barcelona, Spain (2002)

    Google Scholar 

  • Jensen, J.H., Gordon, M.S.: J. Chem. Phys. 108, 4772 (1998)

    Article  Google Scholar 

  • Jensen, J.H.: J. Chem. Phys. 114, 220 (2001)

    Article  Google Scholar 

  • Bailey, D., Feldman, J., Narayanan, S., Lakoff, G.: Modeling embodied lexical development. In: Proceedings of the 19th Cognitive Science Society Conference (1997)

    Google Scholar 

  • Suchman, L.: Plans and Situated actions. Cambridge University Press, Cambridge (1987)

    Google Scholar 

  • Norman, D.: The Design Of Everyday Things. Penguin (1986)

    Google Scholar 

  • Piaget, J.: Structuralism Harper (1970)

    Google Scholar 

  • Bar-yam, Y.: A Mathematically Theory of Strong Emergence. Complexity 8(6) (2004)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2006 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Wheeler, T.J. (2006). Collaborative Multidiscipline/Multiscale Analysis, Modeling, Simulation and Integration in Complex Systems: System Biology. In: Gavrilova, M., et al. Computational Science and Its Applications - ICCSA 2006. ICCSA 2006. Lecture Notes in Computer Science, vol 3980. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11751540_69

Download citation

  • DOI: https://doi.org/10.1007/11751540_69

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-34070-6

  • Online ISBN: 978-3-540-34071-3

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics