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Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 4065))

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Abstract

Protein crystallography can often provide the three-dimensional structures of macro-molecules necessary for functional studies and drug design. However, identifying the conditions that will provide diffraction quality crystals often requires numerous experiments. The use of robots has led to a dramatic increase in the number of crystallisation experiments performed in most laboratories and, in structural genomics centres, tens of thousands of experiments can be produced daily. The results of these experiments must be assessed repeatedly over time and inspection of the results by eye is becoming increasingly impractical. A number of systems are now available for automated imaging of crystallisation experiments and the primary aim of this research is the development of software to automate image analysis.

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References

  1. Mayo, C.J., Diprose, J.M., Walter, T.S., Berry, I.M., Wilson, J., Owens, R.J., Jones, E.Y., Harlos, K., Stuart, D.I., Esnouf, R.M.: Benefits of automated crystallization plate tracking, imaging and analysis. Structure 13, 175–182 (2005)

    Article  Google Scholar 

  2. Bern, M., Goldberg, D., Kuhn, P., Stevens, R.: Automatic classification of protein crystallization images using a line tracking algorithm. J. Appl. Cryst. 37, 279–287 (2004)

    Article  Google Scholar 

  3. Cumbaa, C.A., Lauricella, A., Fehrman, N., Veatch, C., Collins, R., Luft, J., DeTitta, G., Juristica, I.: Automatic classification of sub-microlitre protein-crystallization trials in 1536-well plates. Acta Cryst D59, 1619–1627 (2003)

    Google Scholar 

  4. Spraggon, G., Lesley, S., Kreusch, A., Priestle, J.: Computational analysis of crystallization trials. Acta Cryst. D58, 1915–1923 (2002)

    Google Scholar 

  5. Wilson, J.: Automated evaluation of crystallisation experiments. Cryst. Rev. 10(1), 73–84 (2004)

    Article  Google Scholar 

  6. Qian, C., Lagace, L., Massariol, M.-J., Chabot, C., Yoakim, C., Déziel, R., Tong, L.: A rational approach towards successful crystallization and crystal treatment of human cytomegalovirus protease and its inhibitor complex. Acta Cryst. D56, 175–180 (2000)

    Google Scholar 

  7. Saitoh, K., Kawabata, K., Asama, H., Mishima, T., Sugahara, M., Miyano, M.: Evaluation of protein crysatllization states based on texture information derived from greyscale images. Acta Cryst. D61, 873–880 (2005)

    Google Scholar 

  8. Wilson, J., Berry, I.: The use of gradient direction in pre-processing images from crystallisation experiments. J. Appl. Cryst. 38, 493–500 (2005)

    Article  Google Scholar 

  9. Mueller, U., Nyarsik, L., Horn, M., Rauth, H., Przewieslik, T., Saenger, W., Lehrach, H., Eickhoff, H.: Development of a technology for automation and miniturization of protein crystallization. J. Biotech. 85, 7–14 (2001)

    Article  Google Scholar 

  10. Chayen, N.E., Shaw Stwewart, P.D., Maeder, D.L., Blow, D.M.: An automated system for Micro-batch Protein Crystallization and Screening. J. Appl. Cryst. 23, 297–302 (1990)

    Article  Google Scholar 

  11. Mallat, S.: A theory for multi-resolution signal decomposition; the wavelet representation. IEEE Trans. Patt. Anal. And Mach. Intell. 11, 674–693 (1989)

    Article  MATH  Google Scholar 

  12. Haar, A.: Math. Annal 69, 331–371 (1910)

    MATH  MathSciNet  Google Scholar 

  13. Daubechies, I.: Ten lectures on wavelets. Society for Industrial and Applied Mathematics, Philadelphia, PA

    Google Scholar 

  14. Zuk, W., Ward, K.: Methods of analysis of protein crystal images. J. Cryst. Growth 110, 148–155 (1991)

    Article  Google Scholar 

  15. Wilson, J.: Towards the automated evaluation of crystallisation trials. Acta Cryst. D58, 1907–1914 (2002)

    Google Scholar 

  16. Kohonen, T.: Self-organization and associative memory, 2nd edn. Springer, Berlin (1987)

    Google Scholar 

  17. Mayo, C.J., Diprose, J.M., Walter, T.S., Berry, I.M., Wilson, J., Owens, R.J., Jones, E.Y., Harlos, K., Stuart, D.I., Esnouf, R.M.: Benefits of automated crystallization plate tracking, imaging and analysis. Structure 13, 175–182 (2005)

    Article  Google Scholar 

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© 2006 Springer-Verlag Berlin Heidelberg

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Wilson, J. (2006). Automated Classification of Images from Crystallisation Experiments. In: Perner, P. (eds) Advances in Data Mining. Applications in Medicine, Web Mining, Marketing, Image and Signal Mining. ICDM 2006. Lecture Notes in Computer Science(), vol 4065. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11790853_36

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  • DOI: https://doi.org/10.1007/11790853_36

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-36036-0

  • Online ISBN: 978-3-540-36037-7

  • eBook Packages: Computer ScienceComputer Science (R0)

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