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Geodesic Image Normalization and Temporal Parameterization in the Space of Diffeomorphisms

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Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 4091))

Abstract

Medical image analysis based on diffeomorphisms (differentiable one to one and onto maps with differentiable inverse) has placed computational analysis of anatomy and physiology on firm theoretical ground. We detail our approach to diffeomorphic computational anatomy while highlighting both theoretical and practical benefits. We first introduce the metric used to locate geodesics in the diffeomorphic space. Second, we give a variational energy that parameterizes the image normalization problem in terms of a geodesic diffeomorphism, enabling a fundamentally symmetric solution. This approach to normalization is extended for optimal template population studies using general imaging data. Finally, we show how the temporal parameterization and large deformation capabilities of diffeomorphisms make them appropriate for longitudinal analysis, particularly of neurodegenerative data.

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References

  1. Darwin, C.: Origin of Species. John Murray, London (1856)

    Google Scholar 

  2. Thompson, D.W.: On Growth and Form. Cambridge University Press, England (1917)

    Google Scholar 

  3. Dale, A.M., Fischl, B., Sereno, M.I.: Cortical surface-based analysis i: Segmentation and surface reconstruction. Neuroimage 9(2), 179–194 (1999)

    Article  Google Scholar 

  4. Thompson, P., Toga, A.: A surface-based technique for warping 3-dimensional images of the brain. IEEE Trans. Medical Imaging 15(4), 402–417 (1996)

    Article  Google Scholar 

  5. Csernansky, J.G., Joshi, S., Wang, L., Haller, J.W., Gado, M., Miller, J.P., Grenander, U., Miller, M.I.: Hippocampal morphometry in schizophrenia by high dimensional brain mapping. Proc. Natl. Acad. Sci (USA) 95(19), 11406–11411 (1998)

    Article  Google Scholar 

  6. Studholme, C., Cardenas, V., Blumenfeld, R., Schuff, N., Rosen, H.J., Miller, B., Weiner, M.: Deformation tensor morphometry of semantic dementia with quantitative validation. Neuroimage 21(4), 1387–1398 (2004)

    Article  Google Scholar 

  7. Dann, R., Hoford, J., Kovačič, S., Reivich, M., Bajcsy, R.: Evaluation of elastic matching system for anatomic (CT, MR) and functional (PET) cerebral images. J. Comput. Assist. Tomogr. 13, 603–611 (1989)

    Article  Google Scholar 

  8. Miller, M.I., Beg, M.F., Ceritoglu, C., Stark, C.: Increasing the power of functional maps of the medial temporal lobe by using large deformation diffeomorphic metric mapping. PNAS 102(27), 9685–9690 (2005)

    Article  Google Scholar 

  9. Avants, B., Schoenemann, P.T., Gee, J.C.: Landmark and intensity-driven lagrangian frame diffeomorphic image registration: Application to structurally and functionally based inter-species comparison. Medical Image Analysis (June 2005)

    Google Scholar 

  10. Yan, C., Miller, M.I., Winslow, R.L., Younes, L.: Large deformation diffeomorphic metric mapping of vector fields. TMI 24(9), 1216–1230 (2005)

    Google Scholar 

  11. Arnold, V.I., Khesin, B.A.: Topological methods in hydrodynamics. Ann. Rev. Fluid Mech. 24, 145–166 (1992)

    Article  MathSciNet  Google Scholar 

  12. Ebin, D., Marsden, J.: Groups of diffeomorphisms and the motion of an incompressible fluid. The Annals of Mathematics 92(1), 102–163 (1970)

    Article  MathSciNet  Google Scholar 

  13. Miller, M., Trouve, A., Younes, L.: On the metrics and Euler-Lagrange equations of computational anatomy. Annu. Rev. Biomed. Eng. 4, 375–405 (2002)

    Article  Google Scholar 

  14. Grenander, U., Miller, M.I.: Computational anatomy: An emerging discipline. Quarterly of Applied Mathematics 56(4), 617–694 (1998)

    MATH  MathSciNet  Google Scholar 

  15. Hermosillo, G., Chefd’Hotel, C., Faugeras, O.: A variational approach to multi-modal image matching. Intl. J. Comp. Vis. 50(3), 329–343 (2002)

    Article  MATH  Google Scholar 

  16. Arnold, V.I.: Ordinary Differential Equations. Springer, Berlin (1991)

    Google Scholar 

  17. Dupuis, P., Grenander, U., Miller, M.I.: Variational problems on flows of diffeomorphisms for image matching. Quarterly of Applied Mathematics 56(3), 587–600 (1998)

    MATH  MathSciNet  Google Scholar 

  18. Joshi, S., Davis, B., Jomier, M., Gerig, G.: Unbiased diffeomorphic atlas construction for computational anatomy. Neuroimage (suppl. 1), S151–S160 (September 2004)

    Google Scholar 

  19. Avants, B., Gee, J.C.: Geodesic estimation for large deformation anatomical shape and intensity averaging. Neuroimage (suppl. 1), S139–150 (2004)

    Google Scholar 

  20. Johnson, H.J., Christensen, G.E.: Consistent landmark and intensity-based image registration. IEEE Trans. Med. Imaging 21(5), 450–461 (2002)

    Article  Google Scholar 

  21. Avants, B., Epstein, C.L., Gee, J.C.: Geodesic image interpolation: Parameterizing and interpolating spatiotemporal images. In: ICCV Workshop on Variational and Level Set Methods, pp. 247–258 (2005)

    Google Scholar 

  22. Avants, B., Grossman, M., Gee, J.C.: The correlation of cognitive decline with frontotemporal dementia induced annualized gray matter loss using diffeomorphic morphometry. Alzheimer’s Disease and Associated Disorders 19(suppl. 1), S25–S28 (2005)

    Google Scholar 

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© 2006 Springer-Verlag Berlin Heidelberg

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Avants, B.B., Epstein, C.L., Gee, J.C. (2006). Geodesic Image Normalization and Temporal Parameterization in the Space of Diffeomorphisms. In: Yang, GZ., Jiang, T., Shen, D., Gu, L., Yang, J. (eds) Medical Imaging and Augmented Reality. MIAR 2006. Lecture Notes in Computer Science, vol 4091. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11812715_2

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  • DOI: https://doi.org/10.1007/11812715_2

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-37220-2

  • Online ISBN: 978-3-540-37221-9

  • eBook Packages: Computer ScienceComputer Science (R0)

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