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References
P. Alberti and J.L. Mergny. DNA duplex-quadruplex exchange as the basis for a nano-molecular machine. Proceedings of the National Academy of Sciences of the United States of America, 100:1569–1573, 2003.
J. Bath, S. Green, and A.J. Turberfield. A free-running DNA motor powered by a nicking enzyme. Angewandte Chemie International Edition, 2005. In press. Preprint DOI: 10.1002/anie.200501262.
S. Beyer, P. Nickels, and F.C. Simmel. Periodic DNA nanotemplates synthesized by rolling circle amplification. Nano Letters, 5:719–722, 2005.
N. Chelyapov, et al. DNA triangles and self-assembled hexagonal tilings. Journal of the American Chemical Society, 126:13924–13925, 2004.
J.H. Chen and N.C. Seeman. Synthesis from DNA of a molecule with the connectivity of a cube. Nature, 350:631–633, 1991.
Y. Chen, S.H. Lee, and C. Mao. A DNA nanomachine based on a duplex-triplex transition. Angewandte Chemie International Edition, 43:5335–5338, 2004.
Y. Chen and C. Mao. Reprogramming DNA-directed reactions on the basis of a DNA conformational change. Journal of the American Chemical Society, 126:13240–13241, 2004.
Y. Chen, M.S. Wang, and C.D. Mao. An autonomous DNA nanomotor powered by a DNA enzyme. Angewandte Chemie International Edition, 43:3554–3557, 2004.
A. Chworos, et al. Building programmable jigsaw puzzles with RNA. Science, 306:2068–2072, 2004.
S.A. Claridge, et al. Directed assembly of discrete gold nanoparticle groupings using branched DNA scaffolds. Chemistry of Materials, 17:1628–1635, 2005.
Z. Deng, Y. Tian, S.-H. Lee, A.E. Ribbe, and C. Mao. DNA-encoded self-assembly of gold nanoparticles into one-dimensional arrays. Angewandte Chemie International Edition, 44:3582–3585, 2005.
Z.X. Deng and C.D. Mao. Molecular lithography with DNA nanostructures. Angewandte Chemie International Edition, 43:4068–4070, 2004.
B. Ding, R. Sha, and N.C. Seeman. Pseudohexagonal 2D DNA crystals from double crossover cohesion. Journal of the American Chemical Society, 126:10230–10231, 2004.
L.H. Eckardt, et al. DNA nanotechnology: Chemical copying of connectivity. Nature, 420:286–286, 2002.
A. Ekani-Nkodo, A. Kumar, and D.K. Fygenson. Joining and scission in the self-assembly of nanotubes from DNA tiles. Physical Review Letters, 93, 2004.
L.P. Feng, S.H. Park, J.H. Reif, and H. Yan. A two-state DNA lattice switched by DNA nanoactuator. Angewandte Chemie International Edition, 42:4342–4346, 2003.
T.J. Fu and N.C. Seeman. DNA double-crossover molecules. Biochemistry, 32:3211–3220, 1993.
P. Hazarika, B. Ceyhan, and C.M. Niemeyer. Reversible switching of DNA-gold nanoparticle aggregation. Angewandte Chemie International Edition in English, 43:6469–6471, 2004.
N.R. Kallenbach, R.I. Ma, and N.C. Seeman. An immobile nucleic-acid junction constructed from oligonucleotides. Nature, 305:829–831, 1983.
A.A. Koshkin, et al. LNA (locked nucleic acid): An RNA mimic forming exceedingly stable LNA: LNA duplexes. Journal of the American Chemical Society, 120:13252–13253, 1998.
T.H. LaBean, et al. Construction, analysis, ligation, and self-assembly of DNA triple crossover complexes. Journal of the American Chemical Society, 122:1848–1860, 2000.
J.D. Le, et al. DNA-templated self-assembly of metallic nanocomponent arrays on a surface. Nano Letters, 4:2343–2347, 2004.
H.Y. Li, S.H. Park, J.H. Reif, T.H. LaBean, and H. Yan. DNA-templated self-assembly of protein and nanoparticle linear arrays. Journal of the American Chemical Society, 126:418–419, 2004.
J.W.J. Li and W.H. Tan. A single DNA molecule nanomotor. Nano Letters, 2:315–318, 2002.
S.P. Liao and N.C. Seeman. Translation of DNA signals into polymer assembly instructions. Science, 306:2072–2074, 2004.
D. Liu, S.H. Park, J.H. Reif, and T.H. LaBean. DNA nanotubes self-assembled from triple-crossover tiles as templates for conductive nanowires. Proceedings of the National Academy of Sciences of the United States of America, 101:717–722, 2004.
D. Liu, M.S. Wang, Z.X. Deng, R. Walulu, and C.D. Mao. Tensegrity: Construction of rigid DNA triangles with flexible four-arm DNA junctions. Journal of the American Chemical Society, 126:2324–2325, 2004.
D.S. Liu and S. Balasubramanian. A proton-fuelled DNA nanomachine. Angewandte Chemie International Edition, 42:5734–5736, 2003.
Y. Liu, C. Lin, H. Li, and H. Yan. Aptamer-directed self-assembly of protein arrays on a DNA nanostructure. Angewandte Chemie International Edition, 2005. In press. Preprint DOI: 10.1002/anie.200501089.
C.J. Loweth, W.B. Caldwell, X.G. Peng, A.P. Alivisatos, and P.G. Schultz. DNA-based assembly of gold nanocrystals. Angewandte Chemie International Edition, 38:1808–1812, 1999.
R.I. Ma, N.R. Kallenbach, R.D. Sheardy, M.L. Petrillo, and N.C. Seeman. Three-arm nucleic acid junctions are flexible. Nucleic Acids Research, 14:9745–9753, 1986.
C.D. Mao, W.Q. Sun, and N.C. Seeman. Designed two-dimensional DNA holliday junction arrays visualized by atomic force microscopy. Journal of the American Chemical Society, 121:5437–5443, 1999.
C.D. Mao, W.Q. Sun, Z.Y. Shen, and N.C. Seeman. A nanomechanical device based on the B–Z transition of DNA. Nature, 397:144–146, 1999.
F. Mathieu, et al. Six-helix bundles designed from DNA. Nano Letters, 5:661–665, 2005.
J.C. Mitchell, J.R. Harris, J. Malo, J. Bath, and A.J. Turberfield. Self-assembly of chiral DNA nanotubes. Journal of the American Chemical Society, 126:16342–16343, 2004.
P.E. Nielsen, M. Egholm, and O. Buchardt. Peptide nucleic-acid (PNA) — a DNA mimic with a peptide backbone. Bioconjugate Chemistry, 5:3–7, 1994.
C.M. Niemeyer. DNA-protein nanostructures, In C.M. Niemeyer and C.A. Mirkin, editors, Nanobiotechnology: Concepts, Applications and Perspectives, pages 227–243. Wiley-VCH, Weinheim, 2004.
C.M. Niemeyer, M. Adler, S. Gao, and L. Chi. Supramolecular DNA-streptavidin nanocircles with a covalently attached oligonucleotide moiety. Journal of Biomolecular Structure Dynamics, 20:223–230, 2002.
C.M. Niemeyer and B. Ceyhan. DNA-directed functionalization of colloidal gold with proteins. Angewandte Chemie International Edition in English, 40:3685–3688, 2001.
C.M. Niemeyer, T. Sano, C.L. Smith, and C.R. Cantor. Oligonucleotide-directed self-assembly of proteins: semisynthetic DNA-streptavidin hybrid molecules as connectors for the generation of macroscopic arrays and the construction of supramolecular bioconjugates. Nucleic Acids Research, 22:5530–5539, 1994.
S.H. Park, et al. Programmable DNA self-assemblies for nanoscale organization of ligands and proteins. Nano Letters, 5:729–733, 2005.
S.H. Park, et al. Three-helix bundle DNA tiles self-assemble into 2D lattice or 1D templates for silver nanowires. Nano Letters, 5:693–696, 2005.
J. Qi, X.J. Li, X.P. Yang, and N.C. Seeman. Ligation of triangles built from bulged 3-arm DNA branched junctions. Journal of the American Chemical Society, 118:6121–6130, 1996.
P.W.K. Rothemund, N. Papadakis, and E. Winfree. Algorithmic self-assembly of DNA Sierpinski triangles. PLoS Biology, 2:2041–2053, 2004.
P.W.K. Rothemund, et al. Design and characterization of programmable DNA nano-tubes. Journal of the American Chemical Society, 126:16344–16352, 2004.
N.C. Seeman. Nucleic acid junctions and lattices. Journal of Theoretical Biology, 99:237–247, 1982.
N.C. Seeman. From genes to machines: DNA nanomechanical devices. Trends in Biochemical Sciences, 30:119–125, 2005.
N.C. Seeman and P.S. Lukeman. Nucleic acid nanostructures: bottom-up control of geometry on the nanoscale. Reports on Progress in Physics, 68:237–270, 2005.
W.B. Sherman and N.C. Seeman. A precisely controlled DNA biped walking device. Nano Letters, 4:1203–1207, 2004.
W.M. Shih, J.D. Quispe, and G.F. Joyce. A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron. Nature, 427:618–621, 2004.
J.S. Shin and N.A. Pierce. A synthetic DNA walker for molecular transport. Journal of the American Chemical Society, 126:10834–10835, 2004.
L. Stryer. Biochemistry. W. H. Freeman, New York, 1995.
Y. Tian, Y. He, Y. Chen, P. Yin, and C. Mao. A DNAzyme that walks processively and autonomously along a one-dimensional track. Angewandte Chemie International Edition, 2005. In press. Preprint DOI: 10:1002/anie.200463101.
Y.L. Wang, J.E. Mueller, B. Kemper, and N.C. Seeman. Assembly and characterization of five-arm and six-arm DNA branched junctions. Biochemistry, 30:5667–5674, 1991.
E. Winfree and R. Bekbolatov. Proofreading tile sets: Error correction for algorithmic self-assembly. DNA Computing, 2943:126–144, 2004.
E. Winfree, F.R. Liu, L.A. Wenzler, and N.C. Seeman. Design and self-assembly of two-dimensional DNA crystals. Nature, 394:539–544, 1998.
H. Yan, T.H. LaBean, L.P. Feng, and J.H. Reif. Directed nucleation assembly of DNA tile complexes for barcode-patterned lattices. Proceedings of the National Academy of Sciences of the United States of America, 100:8103–8108, 2003.
H. Yan, S.H. Park, G. Finkelstein, J.H. Reif, and T.H. LaBean. DNA-templated self-assembly of protein arrays and highly conductive nanowires. Science, 301:1882–1884, 2003.
H. Yan, X. Zhang, Z. Shen, and N.C. Seeman. A robust DNA mechanical device controlled by hybridization topology. Nature, 415, 2002.
X.P. Yang, L.A. Wenzler, J. Qi, X.J. Li, and N.C. Seeman. Ligation of DNA triangles containing double crossover molecules. Journal of the American Chemical Society, 120:9779–9786, 1998.
P. Yin, H. Yan, X.G. Daniell, A.J. Turberfield, and J.H. Reif. A unidirectional DNA walker that moves autonomously along a track. Angewandte Chemie International Edition, 43:4906–4911, 2004.
B. Yurke, A.J. Turberfield, A.P. Mills, Jr., F.C. Simmel, and J.L.A. Newmann. DNA-fuelled molecular machine made of DNA. Nature, 406, 2000.
D. Zanchet, C.M. Micheel, W.J. Parak, D. Gerion, and A.P. Alivisatos. Electrophoretic isolation of discrete Au nanocrystal/DNA conjugates. Nano Letters, 1:32–35, 2001.
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Yan, H., Liu, Y. (2006). DNA Nanotechnology: an Evolving Field. In: Chen, J., Jonoska, N., Rozenberg, G. (eds) Nanotechnology: Science and Computation. Natural Computing Series. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-30296-4_3
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