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On Template Method for DNA Sequence Design

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Book cover DNA Computing (DNA 2002)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 2568))

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Abstract

The design of DNA sequences is one of the most practical and important research topics in DNA computing. Although the design of DNA sequences is dependent on the protocol of biological experiments, it is highly required to establish a method for the systematic design of DNA sequences, which could be applied to various design constraints. Recently, Arita proposed an interesting design method, called template method, for DNA word design. The current paper discusses on some extensions of the template method, where we propose a variant of template method, the use of multiple templates, and show their effectiveness. Furthermore, we also present some theoretical properties of templates.

The first author was supported in part by Japan Society for the Promotion of Science, Grant-in-Aid for Exploratory Research NO.13878054, 2001.

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References

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Author information

Authors and Affiliations

  1. Department of Computer Science, University of Electro-Communications, 1-5-1, Chofugaoka, 182-8585, Chofu, Tokyo, JAPAN

    Satoshi Kobayashi & Tomohiro Kondo

  2. PRESTO, JST and Computational Biology Research Center, AIST2-41-6,Aomi, Koto-ku, 135-0064, Tokyo, JAPAN

    Masanori Arita

Authors
  1. Satoshi Kobayashi
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  2. Tomohiro Kondo
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  3. Masanori Arita
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Editor information

Editors and Affiliations

  1. Department of Computer Science, University of Toyko Graduate School of Information Science and Technology, 7-3-1 Hongo, Bunkyo-ku, 113-8565, Tokyo, Japan

    Masami Hagiya

  2. Division of Complex Systems Technology, Hokkaido University Graduate School of Engineering, N-13, W-8, KITA-KU, 060, Sapporo, Japan

    Azuma Ohuchi

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© 2003 Springer-Verlag Berlin Heidelberg

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Kobayashi, S., Kondo, T., Arita, M. (2003). On Template Method for DNA Sequence Design. In: Hagiya, M., Ohuchi, A. (eds) DNA Computing. DNA 2002. Lecture Notes in Computer Science, vol 2568. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-36440-4_18

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  • DOI: https://doi.org/10.1007/3-540-36440-4_18

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  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-00531-5

  • Online ISBN: 978-3-540-36440-5

  • eBook Packages: Springer Book Archive

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