Skip to main content

Accretive Rules in Cayley P Systems

  • Conference paper
  • First Online:

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 2597))

Abstract

During a discussion taking place at WMC’01, G. Paun put the question of what could be computed only by moving symbols between membranes. In this paper we provide some elements of the answer, in a setting similar to tissue Psystems, where the set of membranes is organized into a finite graph or into a Cayley graph, and using a very simple propagation process characterizing accretive growth. Our main result is to characterize the final configuration as a least fixed point and to establish two series of approximations that converge to it. All the notions introduced (Cayley graph of membranes, accretive rule and iteration) have been implemented in the MGS programming language and the two approximation series can be effectively computed in Pressburger arithmetics using the omega calculator in the case of Abelian Cayley graphs.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. A. Cohen. Structure de données régulières et analyse de flot. DEA, ENS-Lyon, June 1996.

    Google Scholar 

  2. P. Feautrier. Dataflow analysis of scalar and array references. Int. Journal of Parallel Programming, 20(1):23–53, February 1991.

    Article  MATH  Google Scholar 

  3. J.-L. Giavitto, C. Godin, O. Michel, and P. Prusinkiewicz. Biological Modeling in the Genomic Context, chapter “Computational Models for Integrative and Developmental Biology”. Hermes, July 2002.

    Google Scholar 

  4. J.-L. Giavitto. Scientific report for the tenure. Technical report, LRI, Université de Paris-Sud, centre d’Orsay, September 1999. Research Report 1226.

    Google Scholar 

  5. J.-L. Giavitto. A framework for the recursive definition of data structures. In Proceedings of the 2nd Imternational ACM SIGPLANConference on Principles and Practice of Declarative Programming (PPDP-00), pages 45–55. ACM Press, September 20–23 2000.

    Google Scholar 

  6. J.-L. Giavitto and O. Michel. The topological structures of membrane computing. Fundamenta Informaticae, 49:107–129, 2002.

    MathSciNet  Google Scholar 

  7. M.-C. Heydemann. Graph Symmetry, chapter “Cayley graphs and interconnection networks”, pages 167–224. Kluwer Academic Publisher, 1997.

    Google Scholar 

  8. B. Joinnault. Conception d’algorithmes et d’architecture systoliques. PhD thesis, Thèse de l’Université de Rennes I, September 1987.

    Google Scholar 

  9. W. Kelly, V. Maslov, W. Pugh, E. Rosser, T. Shpeisman, and D. Wonnacott. The Omega calculator and library, version 1.1.0. College Park, MD 20742, 18 november 1996.

    Google Scholar 

  10. R.M. Karp, R.E. Miller, and S. Winograd. The organization of computations for uniform recurrence equations. Journal of the ACM, 14(3):563–590, July 1967.

    Article  MathSciNet  MATH  Google Scholar 

  11. W. Kelly, W. Pugh, E. Rosser, and T. Shpeisman. Transitive closure of infinite graphs and its application. Technical Report UMIACS-TR-95-48, CS-TR-3457, Univ. of Maryland, College Park, MD 20742, 14 Aprils 1994.

    Google Scholar 

  12. B. Lisper and J.-F. Collard. Extent analysis of data fields. Technical Report TRITA-IT R 94:03, Royal Institute of Technology, Sweden, January 1994.

    Google Scholar 

  13. C. Martin-Vide, G. Paun, J. Pazos, and A. Rodriguez-Paton. Tissue PSystems. Technical Report TUCS tech. rep. 421, Turku Centre for Computer Science, September 2001.

    Google Scholar 

  14. G. Paun. Computing with membranes: An introduction. Bulletin of the European Association for Theoretical Computer Science, 67:139–152, February 1999.

    Google Scholar 

  15. G. Paun. Computing with membranes. Journal of Computer and System Sciences, 61:108–143, 2000.

    Article  MathSciNet  MATH  Google Scholar 

  16. G. Paun. From cells to computers: Computing with membranes (p systems). Biosystems, 59(3):139–158, March 2001.

    Article  Google Scholar 

  17. G. Paun, Y. Sakakibara, and T. Yokomori. P systems on graphs of restricted forms. Publ. Math. Debrecen, 2001.

    Google Scholar 

  18. Z. Róka. One-way cellular automata on Cayley graphs. Theoretical Computer Science, 132(1–2):259–290, 26 September 1994.

    Google Scholar 

  19. Z. Róka. The firing squad synchronization problem on Cayley graphs. Lecture Notes in Computer Science, 969:402–411, 1995.

    Google Scholar 

  20. Z. Róka. Simulations between cellular automata on Cayley graphs. Lecture Notes in Computer Science, 911:483–493, 1995.

    Google Scholar 

  21. Y. Saouter and P. Quinton. Computability of recurrence equations. Theoretical Computer Science, 116(2):317–337, August 1993.

    Article  MathSciNet  MATH  Google Scholar 

  22. R. Thomas, D. Thieffry, and M. Kaufman. Dynamical behaviours of regulatory networks-I. biological role of feedback loops and pratical use of the concept of feedback loop. Bulletin of Mathematical Biology, 57(2):247–276, 1995.

    MATH  Google Scholar 

  23. H.P. Yockey, R.P. Platzman, and H. Quastler, editors. Symposium on Information Theory in Biology. Pergamon Press, New York, London, 1958.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2003 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Jean-Louis, G., Michel, O., Cohen, J. (2003). Accretive Rules in Cayley P Systems. In: PĂun, G., Rozenberg, G., Salomaa, A., Zandron, C. (eds) Membrane Computing. WMC 2002. Lecture Notes in Computer Science, vol 2597. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-36490-0_21

Download citation

  • DOI: https://doi.org/10.1007/3-540-36490-0_21

  • Published:

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-00611-4

  • Online ISBN: 978-3-540-36490-0

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics