Skip to main content

A Realization of Information Gate by Using Enterococcus faecalis Pheromone System

  • Conference paper
  • First Online:

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 2340))

Abstract

In this paper, we introduce a novel signal element by using bacterial pheromones. In multicellular organism, every cell can communicate and exchange information with other cells. Bacteria also have such mechanisms. Enterococcus faecalis, one of the gram-positive bacteria, has a unique pheromone system. Male cells are stimulated by pheromones from female cells, and they give their plasmid to female cells through conjugation phenomenon. The variety of pheromones and their inducible activities of plasmid transfer inspire us that Enterococcus faecalis can serve as a pheromone-dependant DNA transporter. We show a design to realize logically controllable Information Gates by using Enterococcus faecalis and show an experimental plan. It is still on going project, but we can show the feasibility that bacterial pheromone system would provide alternative methodologies in molecular computing research.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Head, T.: Circular suggestions for DNA computing. in Carbone A, Gromov M, Pruzinkiewcz P, eds., Pattern Formation in Biology, Vision and Dynamics, World Scientific, Singapore and London. (1999) 325–335.

    Google Scholar 

  2. Ehrenfeucht, A., Harju, T., Petre, I., and Rozenberg, G.: Patterns of micronuclear genes in ciliates. 7th International Meetings on DNA Based Computers. (2001) 33–42.

    Google Scholar 

  3. Bloom, B., and Bancroft, C.: Liposome Mediated Biomolecular Computation. DNA Based Computers V. (1999) 75–84.

    Google Scholar 

  4. Abelson, H., Knight, T.F., and Sussman, G.J.: Amorphous Computing. White paper. (1995) October.

    Google Scholar 

  5. Head, T.: Communication by documents in communities of organisms, Millennium III, Winter issue 199/2000, Published by Current Media Group in collaboration with the Romanian Academy, the Romanian Association for the Club of Rome and the Black Sea University Foundation. ISSN 1454-7759.

    Google Scholar 

  6. Bassler, B.L.: How Bacteria talk to each other: regulation of gene expression by quorum sensing. Current Opinion in Microbiology. 2 (1999) 582–587.

    Article  Google Scholar 

  7. Weiss, R., and Knight, Jr., T.F.: Engineered communications for microbial robotics. 6th DIMACS workshop on DNA based computers. (2000) 5–19.

    Google Scholar 

  8. Clewell, D.B., and Weaver, K.E.: Sex pheromones and Plasmid transfer in Enterococcus faecalis. Plasmid 21 (1989) 175–184.

    Article  Google Scholar 

  9. Clewell, D.B.: Bacterial Sex Pheromone-Induced Plasmid Transfer. Cell. 73 (1993) 9–12.

    Article  Google Scholar 

  10. Wirth, R.: The sex pheromone system of Enterococcus faecalis. European Journal of Biochemistry. 222 (1994) 235–246.

    Article  Google Scholar 

  11. Ogihara, M., and Ray, A.: DNA-based parallel computation by “counting.” 3rd DIMACS workshop on DNA based computers. (1997) 265–274.

    Google Scholar 

  12. Liu, Q., Wang, L., Frutos, A.G., Condon, A.E., Corn, R.M., and Smith, L.M.: DNA computing on surfaces. Nature 403 (2000), 175–179.

    Article  Google Scholar 

  13. LaBean, T.H., Winfree, E., Reif, J.H.: Experimental progress in computation by self-assembly of DNA tiling. 5th DIMACS workshop on DNA based computers (1999), 121–138.

    Google Scholar 

  14. Winfree, E., Eng, T., and Rozenberg, G.: String tile models for DNA computing by self-assembly. 6th DIMACS workshop on DNA based computers. (2000) 65–84.

    Google Scholar 

  15. Nakayama, J.: Chemistry and Genetics on Sex Pheromone Signaling in Enterococcus faecalis. Nippon Nogeikagaku Kaishi 73(11) (1999), 1155–1166.

    MathSciNet  Google Scholar 

  16. Andrup, L., and Anderson, K.: A comparison of the kinetics of plasmid transfer in the conjugation systems encoded by the F plasmid from Escherichia coli and plasmid pCF10 from Enterococcus faecalis. Microbiology 145 (1999), 2001–2009.

    Article  Google Scholar 

  17. Nakayama, J., Dunny, G.M., Clewell, D.B., and Suzuki, A.: Quantitative Analysis for pheromone inhibitor and pheromone shutdown in Enterococcus faecalis. Developments in Biological Standarization 85 (1995), 35–38.

    Google Scholar 

  18. Hagiya, M.: Towards Autonomous Molecular Computers. Genetic Programming (1998) Proceedings of the Third Annual Conference, 691–699.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2002 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Wakabayashi, K., Yamamura, M. (2002). A Realization of Information Gate by Using Enterococcus faecalis Pheromone System. In: Jonoska, N., Seeman, N.C. (eds) DNA Computing. DNA 2001. Lecture Notes in Computer Science, vol 2340. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-48017-X_25

Download citation

  • DOI: https://doi.org/10.1007/3-540-48017-X_25

  • Published:

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-43775-8

  • Online ISBN: 978-3-540-48017-4

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics