Research done while visiting the University of Arizona, partially supported by NLM grant LM-4960.
Partially supported by NLM grant LM-4960.
Preview
Unable to display preview. Download preview PDF.
References
L. Allison and C.S. Wallace. The Posterior Probability Distribution of Alignments and Its Application to Parameter Estimation of Evolutionary Trees and to Optimization of Multiple Alignments. Journal of Molecular Evolution, 39:418–430, 1994.
W.I. Chang and J. Lampe. Theoretical and Empirical Comparisons of Approximate String Matching Algorithms. In Proc. CPM92, LNCS 644, pages 175–184, 1992.
M.O. Dayhoff, R.M. Schwartz, and B.C. Orcutt. A Model of Evolutionary Change in Proteins. Matrices for Detecting Distant Relationships. Atlas of Protein Sequence and Structure, 5:345–358, 1978.
W.M. Fitch. Random Sequences. Journal of Molecular Biology, 163:171–176, 1983.
S. Kannan, Z. Sweedyk, and S. Mahaney. Counting and Random Generation of Strings in Regular Languages. In Proceedings of the Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, pages 551–557, 1995.
S. Karlin and S.F. Altschul. Methods for Assessing the Statistical Significance of Molecular Sequence Features by using General Scoring Schemes. Proc. Nat. Acad. Sci. U.S.A., 87:2264–2268, 1990.
D.E. Knuth, J.H. Morris, and V.R. Pratt. Fast Pattern Matching in Strings. SIAM Journal on Computing, 6(2):323–350, 1977.
G. Mehldau and E.W. Myers. A System for Pattern Matching Applications on Biosequences. CABIOS, 9(3):299–314, 1993.
E.W. Myers. An O(ND) Differences Algorithm. Algorithmica, 2(1):251–266, 1986.
E.W. Myers. A Sublinear Algorithm for Approximate Keyword Searching. Algorithmica, 12(4/5):345–374, 1994.
E.W. Myers. Approximate Matching of Network Expressions with Spacers. Journal of Computational Biology, 3(1):33–51, 1996.
E. Ukkonen. Algorithms for Approximate String Matching. Information and Control, 64:100–118, 1985.
R.A. Wagner and M.J. Fischer. The String to String Correction Problem. Journal of the ACM, 21(1):168–173, 1974.
Author information
Authors and Affiliations
Editor information
Rights and permissions
Copyright information
© 1997 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Kurtz, S., Myers, G. (1997). Estimating the probability of approximate matches. In: Apostolico, A., Hein, J. (eds) Combinatorial Pattern Matching. CPM 1997. Lecture Notes in Computer Science, vol 1264. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-63220-4_49
Download citation
DOI: https://doi.org/10.1007/3-540-63220-4_49
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-63220-7
Online ISBN: 978-3-540-69214-0
eBook Packages: Springer Book Archive