Abstract
In this work, we use a 3D Fully Convolutional Network (FCN) architecture for pulmonary nodule segmentation. Our method integrates FCN and Conditional Random Field(CRF) into an end-to-end network. Using this approach, the spatial features of CT image series can be better utilized to obtain the three-dimensional global features of pulmonary nodules according to the context. The model includes pulmonary nodule segmentation and classification recognition and the noise is reduced by effective image preprocessing. We achieved competitive results during the testing phase of the LIDC/IDRI dataset for segmentation and detection with sensitivity of 0.918 using 3D-FCN and VGG19.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Badrinarayanan, V., Kendall, A., Cipolla, R.: SegNet: a deep convolutional encoder-decoder architecture for image segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 39(12), 2481–2495 (2017)
Noh, H., Hong, S., Han, B.: Learning deconvolution network for semantic segmentation. In: Proceedings of the 2015 IEEE International Conference on Computer Vision (ICCV), ICCV 2015, pp. 1520–1528. IEEE Computer Society, Washington, DC, USA (2015)
Yu, F., Koltun, V.: Multi-scale context aggregation by dilated convolutions. CoRR, arXiv:abs/1511.07122 (2015)
Chen, L.C., Papandreou, G., Kokkinos, I., Murphy, K., Yuille, A.L.: Deeplab: semantic image segmentation with deep convolutional nets, atrous convolution, and fully connected CRFS. CoRR, arXiv:abs/1606.00915 (2016)
Chen, L.C., Papandreou, G., Kokkinos, I., Murphy, K., Yuille, A.L.: Semantic image segmentation with deep convolutional nets and fully connected CRFS. CoRR, arXiv:abs/1412.7062 (2014)
Liu, Z., Li, X., Luo, P., Loy, C.C., Tang, X.: Semantic image segmentation via deep parsing network. CoRR, arXiv:abs/1509.02634 (2015)
Zheng, S., et al.: Conditional random fields as recurrent neural networks. CoRR, arXiv:abs/1502.03240 (2015)
Chandra, S., Kokkinos, I.: Fast, exact and multi-scale inference for semantic image segmentation with deep Gaussian CRFS. CoRR, arXiv:abs/1603.08358 (2016)
Luc, P., Couprie, C., Chintala, S., Verbeek, J.: Semantic segmentation using adversarial networks. CoRR, arXiv:abs/1611.08408 (2016)
Kozinski, M., Simon, L., Jurie, F.: An adversarial regularisation for semi-supervised training of structured output neural networks. CoRR, arXiv:abs/1702.02382 (2017)
Ronneberger, O., Fischer, P., Brox, T.: U-net: convolutional networks for biomedical image segmentation. CoRR arXiv:abs/1505.04597 (2015)
Zhao, H., Shi, J., Qi, X., Wang, X., Jia, J.: Pyramid scene parsing network. CoRR, arXiv:abs/1612.01105 (2016)
He, K., Gkioxari, G., Dollár, P., Girshick, R.B.: Mask R-CNN. CoRR, arXiv:abs/1703.06870 (2017)
Girshick, R.B., Donahue, J., Darrell, T., Malik, J.: Rich feature hierarchies for accurate object detection and semantic segmentation. CoRR, arXiv:abs/1311.2524 (2013)
Girshick, R.B.: Fast R-CNN. CoRR, arXiv:abs/1504.08083 (2015)
Ren, S., He, K., Girshick, R.B., Sun, J.: Faster R-CNN: towards real-time object detection with region proposal networks. CoRR arXiv:abs/1506.01497 (2015)
Ding, J., Li, A., Hu, Z., Wang, L.: Accurate pulmonary nodule detection in computed tomography images using deep convolutional neural networks. CoRR, arXiv:abs/1706.04303 (2017)
Ji, S., Xu, W., Yang, M., Yu, K.: 3D convolutional neural networks for human action recognition. IEEE Trans. Pattern Anal. Mach. Intell. 35(1), 221–231 (2013)
Kamnitsas, K., et al.: Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation. CoRR, arXiv:abs/1603.05959 (2016)
Jesson, A., Arbel, T.: Brain tumor segmentation using a 3D FCN with multi-scale loss. In: Crimi, A., Bakas, S., Kuijf, H., Menze, B., Reyes, M. (eds.) BrainLes 2017. LNCS, vol. 10670, pp. 392–402. Springer, Cham (2018). https://doi.org/10.1007/978-3-319-75238-9_34
Yu, L., Yang, X., Qin, J., Heng, P.-A.: 3D FractalNet: dense volumetric segmentation for cardiovascular MRI volumes. In: Zuluaga, M.A., Bhatia, K., Kainz, B., Moghari, M.H., Pace, D.F. (eds.) RAMBO/HVSMR -2016. LNCS, vol. 10129, pp. 103–110. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-52280-7_10
Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. CoRR, arXiv:abs/1606.06650 (2016)
Li, J., Zhang, R., Shi, L., Wang, D.: Automatic whole-heart segmentation in congenital heart disease using deeply-supervised 3D FCN. In: Zuluaga, M.A., Bhatia, K., Kainz, B., Moghari, M.H., Pace, D.F. (eds.) RAMBO/HVSMR -2016. LNCS, vol. 10129, pp. 111–118. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-52280-7_11
Acknowledgements
This work has been supported by the Ningbo eHealth Project (No.2016C11024) and the Humanities and Social Sciences Foundation of the Ministry of Education with Grant No.16YJCZH112. This work also supported a Project Supported by Scientific Research Fund of Zhejiang Provincial Education Department Y201553788.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2018 Springer Nature Switzerland AG
About this paper
Cite this paper
Nie, Y., Zhuo, D., Song, G., Wen, S. (2018). Pulmonary Nodule Segmentation Method of CT Images Based on 3D-FCN. In: U, L., Xie, H. (eds) Web and Big Data. APWeb-WAIM 2018. Lecture Notes in Computer Science(), vol 11268. Springer, Cham. https://doi.org/10.1007/978-3-030-01298-4_13
Download citation
DOI: https://doi.org/10.1007/978-3-030-01298-4_13
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-01297-7
Online ISBN: 978-3-030-01298-4
eBook Packages: Computer ScienceComputer Science (R0)