Skip to main content

Left Ventricle Full Quantification via Hierarchical Quantification Network

  • Conference paper
  • First Online:

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 11395))

Abstract

Automatic quantitative analysis of cardiac left ventricle (LV) function is one of challenging task for heart disease diagnosis. Four different parameters, i.e. regional wall thicknesses (RWT), area of myocardium and LV cavity, LV dimensions in different direction and cardiac phase, are used for evaluating the LV function. In this paper, we implemented a novel multi-task quantification network (HQNet) to simultaneously quantify the four different parameters. The network is mainly constituted by a customized convolutional neural network named Hierarchical convolutional neural network (HCNN) which includes different pyramid-like 3D convolution blocks with different kernel sizes for efficient feature embedding; and two long-short term memory (LSTM) networks for temporal modeling. Respecting inter-task correlations, our proposed network uses multi-task constraints for phase to improve the final estimation of phase. Selu activation function is selected instead of relu, which can bring better performance of model in experiments. Experiments on MR sequences of 145 patients show that HQNet achieves high accurate estimation by means of 7-fold cross validation. The mean absolute error (MAE) of average areas, RWT, dimensions are \( 197\,{\text{mm}}^{2} ,1.51\,{\text{mm}},2.57\,{\text{mm}} \) respectively. The error rate of phase classification is 9.8%. These results indicate that the approach we proposed has a promising performance to estimate all four parameters.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Notes

  1. 1.

    LVQuan18 challenge, website: https://lvquan18.github.io/.

References

  1. Xue, W., Brahm, G., Pandey, S., Leung, S., Li, S.: Full left ventricle quantification via deep multitask relationships learning. Med. Image Anal. 43, 54–65 (2018). https://doi.org/10.1016/j.media.2017.09.005

    Article  Google Scholar 

  2. Xue, W., Lum, A., Mercado, A., Landis, M., Warrington, J., Li, S.: Full quantification of left ventricle via deep multitask learning network respecting intra- and inter-task relatedness. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10435, pp. 276–284. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-66179-7_32

    Chapter  Google Scholar 

  3. Xue, W., Nachum, I.B., Pandey, S., Warrington, J., Leung, S., Li, S.: Direct estimation of regional wall thicknesses via residual recurrent neural network. In: Niethammer, M., et al. (eds.) IPMI 2017. LNCS, vol. 10265, pp. 505–516. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-59050-9_40

    Chapter  Google Scholar 

  4. Karamitsos, T.D., Francis, J.M., Myerson, S., Selvanayagam, J.B., Neubauer, S.: The role of cardiovascular magnetic resonance imaging in heart failure. J. Am. Coll. Cardiol. 54(15), 1407–1424 (2009)

    Article  Google Scholar 

  5. Attili, A.K., Schuster, A., Nagel, E., Reiber, J.H., van der Geest, R.J.: Quantification in cardiac MRI: advances in image acquisition and processing. Int. J. Cardiovasc. Imaging 26(1), 27–40 (2010)

    Article  Google Scholar 

  6. Ayed, I.B., Chen, H.M., Punithakumar, K., Ross, I., Li, S.: Max-flow segmentation of the left ventricle by recovering subject-specific distributions via a bound of the Bhattacharyya measure. Med. Image Anal. 16(1), 87–100 (2012)

    Article  Google Scholar 

  7. Graves, A.: Supervised sequence labelling. In: Graves, A. (ed.) Supervised Sequence Labelling with Recurrent Neural Networks. SCI, vol. 385, pp. 5–13. Springer, Heidelberg (2012). https://doi.org/10.1007/978-3-642-24797-2_2

    Chapter  MATH  Google Scholar 

  8. Kong, B., Zhan, Y., Shin, M., Denny, T., Zhang, S.: Recognizing end-diastole and end-systole frames via deep temporal regression network. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9902, pp. 264–272. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46726-9_31

    Chapter  Google Scholar 

  9. Petitjean, C., Dacher, J.N.: A review of segmentation methods in short axis cardiac MR images. Med. Image Anal. 15(2), 169–184 (2011)

    Article  Google Scholar 

  10. Poudel, R.P., Lamata, P., Montana, G.: Recurrent fully convolutional neural networks for multi-slice MRI cardiac segmentation. arXiv:1608.03974 (2016)

  11. Wang, Z., Ben Salah, M., Gu, B., Islam, A., Goela, A., Li, S.: Direct estimation of cardiac biventricular volumes with an adapted bayesian formulation. IEEE TBE 61(4), 1251–1260 (2014)

    Google Scholar 

  12. Zhang, Y., Yeung, D.Y.: A convex formulation for learning task relationships in multi-task learning. In: UAI, pp. 733–742 (2010)

    Google Scholar 

  13. Zhang, Z., Luo, P., Loy, C.C., Tang, X.: Facial landmark detection by deep multi-task learning. In: Fleet, D., Pajdla, T., Schiele, B., Tuytelaars, T. (eds.) ECCV 2014. LNCS, vol. 8694, pp. 94–108. Springer, Cham (2014). https://doi.org/10.1007/978-3-319-10599-4_7

    Chapter  Google Scholar 

  14. Shi, X., Chen, Z., Wang, H., Yeung, D.-Y.: Convolutional LSTM network: a machine learning approach for precipitation nowcasting. In: Neural Information Processing Systems (NIPS) (2015)

    Google Scholar 

  15. Gers, F.A., Schmidhuber, J., Cummins, F.A.: Learning to forget: continual prediction with LSTM. Neural Comput. 12(10), 2451–2471 (2000)

    Article  Google Scholar 

  16. Zhao, H., Shi, J., Qi, X., Wang, X., Jia, J.: Pyramid scene parsing network. arXiv:1612.01105 (2016)

  17. Hochreiter, S., Schmidhuber, J.: Long short-term memory. Neural Comput. 9(8), 1735–1780 (1997)

    Article  Google Scholar 

  18. Szegedy, C., et al.: Going deeper with convolutions. In: CVPR (2015)

    Google Scholar 

  19. Liu, Y., Yao, X.: Ensemble learning via negative correlation. Neural Netw. 12, 1399–1404 (1999)

    Article  Google Scholar 

  20. Rosen, B.: Ensemble learning using decorrelated neural networks. Connect. Sci. 8(3/4), 373–383 (1996)

    Article  Google Scholar 

  21. Klambauer, G., Unterthiner, T., Mayr, A., Hochreiter, S.: Self-normalizing neural networks. arXiv preprint arXiv:1706.02515 (2017)

  22. Objective, LVQuan18 challenge. https://lvquan18.github.io/2018/03/12/objective.html. Accessed 26 June 2018

  23. Szegedy, C., Vanhoucke, V., Ioffe, S., Shlens, J., Wojna, Z.: Rethinking the inception architecture for computer vision. In: CVPR (2016). https://arxiv.org/abs/1512.00567

Download references

Acknowledgement

This research was supported by National Natural Science Foundation under grants (31571001, 61828101), the National Key Research and Development Program of China (2017YFC0107903) and the Science Foundation for The Excellent Youth Scholars of Southeast University.

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Yang, G. et al. (2019). Left Ventricle Full Quantification via Hierarchical Quantification Network. In: Pop, M., et al. Statistical Atlases and Computational Models of the Heart. Atrial Segmentation and LV Quantification Challenges. STACOM 2018. Lecture Notes in Computer Science(), vol 11395. Springer, Cham. https://doi.org/10.1007/978-3-030-12029-0_46

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-12029-0_46

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-12028-3

  • Online ISBN: 978-3-030-12029-0

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics