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Data-Driven Extraction of Quantitative Multi-dimensional Associations of Cardiovascular Drugs and Adverse Drug Reactions

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Practical Applications of Computational Biology and Bioinformatics, 13th International Conference (PACBB 2019)

Part of the book series: Advances in Intelligent Systems and Computing ((AISC,volume 1005 ))

Abstract

Early detection of adverse drug reactions as a part of post-marketing surveillance is very crucial for saving a number of persons from unwanted consequences of drugs. Along with the drug, patient’s traits such as age, gender, weight, location are key factors for occurrence of adverse effects. The relationship between drug, patient attributes and adverse drug effects can be precisely represented by quantitative multi-dimensional association rules. But discovery of such rules faces the challenge of data sparsity because of the large number of possible side effects of a drug and fewer number of corresponding data records. In this paper, to address the data sparsity issue, we propose to use variable support based LPMiner technique for detecting quantitative multi-dimensional association rules. For experimental analysis, data corresponding to three cardiovascular drugs namely Rivaroxaban, Ranolazine and Alteplase has been taken from U.S. FDA Adverse Event Reporting System database. The experimental results show that based on LPMiner technique a number of association rules have been detected which went undetected in case of constant support based apriori and FP-Growth technique.

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References

  1. George, C.: Reporting Adverse Drug Reactions: A Guide for Healthcare Professionals. British Medical Association, London (2006)

    Google Scholar 

  2. Rockville, M.D.: Reducing and Preventing Adverse Drug Events To Decrease Hospital Costs: Research in Action. Agency for Healthcare Research and Quality, Issue 1, March 2014

    Google Scholar 

  3. Chen, Y., Guo, J.J., Steinbuch, M.: Comparison of sensitivity and timing of early signal detection of four frequently used signal detection methods: an empirical study based on the US FDA adverse event reporting system database. Pharm Med. 22, 359–365 (2008)

    Article  Google Scholar 

  4. World Health Organization (WHO): The Importance of Pharmacovigilance: Safety Monitoring of Medicinal Products (2002)

    Google Scholar 

  5. Lindquist, M.: The need for definitions in pharmacovigilance. Drug Saf. 30, 825–830 (2007)

    Article  Google Scholar 

  6. World Health Organization: The Importance of Pharmacovigilance. WHO Collaborating Centre for International Drug Monitoring, Geneva, vol. 44 (2002)

    Google Scholar 

  7. U.S. Food and Drug Administration, FAERS quarterly data files. https://www.fda.gov/drugs/guidancecomplianceregulatoryinformation/surveillance/adversedrugeffects/default.Htm. Accessed Oct 2018

  8. Han, J., Kamber, M.: Data Mining: Concepts and Techniques. Elsevier, Amsterdam (2011)

    MATH  Google Scholar 

  9. Wang, C., et al.: Exploration of the association rules mining technique for the signal detection of adverse drug events in spontaneous reporting systems. PloS One 7(7) (2012)

    Article  Google Scholar 

  10. Yildirim, P., Ilyas, O., Holzinger, A.: On knowledge discovery in open medical data on the example of the FDA drug adverse event reporting system for alendronate (FOSAMAX). In: Holzinger, A., Pasi, G. (eds.) Human-Computer Interaction and Knowledge Discovery in Complex, Unstructured, Big Data, pp. 195–206. Springer, Heidelberg (2013)

    Chapter  Google Scholar 

  11. Reps, J.M., Aickelin, U., Ma, J., Zhang, Y.: Refining adverse drug reactions using association rule mining for electronic healthcare data. In: Proceedings of IEEE International Conference on Data Mining Workshop (ICDMW 2014), pp. 763–770 (2014)

    Google Scholar 

  12. Yang, X., Albin, A., Ren, K., Zhang, P., Etter, J.P., Lin, S., Li, L.: Efficiently mining adverse event reporting system for multiple drug interactions. AMIA Summits Transl. Sci. Proc. 120 (2014)

    Google Scholar 

  13. Agrawal, R., Srikant, R.: Fast algorithms for mining association rules. In: Proceedings of 20th International Conference on Very Large Data Bases, VLDB, vol. 1215 (1994)

    Google Scholar 

  14. Han, J., Pei, J., Yin, Y.: Mining frequent patterns without candidate generation. In: ACM SIGMOD Record, vol. 29, no. 2. ACM (2000)

    Google Scholar 

  15. Seno, M., Karypis, G.: LPMiner: an algorithm for finding frequent itemsets using length-decreasing support constraint. In: Proceedings of IEEE International Conference on Data Mining (ICDM 2001) (2001)

    Google Scholar 

  16. Tan, P.-N.: Introduction to Data Mining. Pearson Education India, New Delhi (2007)

    Google Scholar 

  17. Sakaeda, T., Kadoyama, K., Okuno, Y.: Adverse event profiles of platinum agents: data mining of the public version of the FDA adverse event reporting system, AERS, and reproducibility of clinical observations. Int. J. Med. Sci. 8(6), 487–491 (2011)

    Article  Google Scholar 

  18. Dixon, J.K.: Pattern recognition with partly missing data. IEEE Trans. Syst. Man Cybern. 9, 617–621 (1979)

    Article  Google Scholar 

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Correspondence to Vipin Pal or Yogita .

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Chutia, U., Sangma, J.W., Pal, V., Yogita (2020). Data-Driven Extraction of Quantitative Multi-dimensional Associations of Cardiovascular Drugs and Adverse Drug Reactions. In: Fdez-Riverola, F., Rocha, M., Mohamad, M., Zaki, N., Castellanos-GarzĂ³n, J. (eds) Practical Applications of Computational Biology and Bioinformatics, 13th International Conference. PACBB 2019. Advances in Intelligent Systems and Computing, vol 1005 . Springer, Cham. https://doi.org/10.1007/978-3-030-23873-5_9

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