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Grain Segmentation in Atomic Force Microscopy for Thin-Film Deposition Quality Control

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New Trends in Image Analysis and Processing – ICIAP 2019 (ICIAP 2019)

Abstract

In this paper we propose an image segmentation method specifically designed to detect crystalline grains in microscopic images. We build on the watershed segmentation approach; we propose a preprocessing pipeline to generate a topographic map exploiting the physical nature of the incoming data (i.e. Atomic Force Microscopy) to emphasize grain boundaries and generate seeds for basins. Experimental results show the effectiveness of the proposed method against grain segmentation implementations available in commercial software on a new labelled dataset with an average improvement of over 20% in precision and recall over the standard implementation of watershed segmentation.

This work has been partially supported by the project of the Italian Ministry of Education, Universities and Research (MIUR) “Dipartimenti di Eccellenza 2018-2022”, and has been partially supported by the POR FESR 2014-2020 Work Program (Action 1.1.4, project No.10066183).

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Notes

  1. 1.

    http://vips.sci.univr.it/dataset/grainseg.

  2. 2.

    www.ntmdt-si.com.

  3. 3.

    www.imagemet.com/products/spip.

  4. 4.

    www.mipar.us.

  5. 5.

    www.digitalsurf.com.

  6. 6.

    gwyddion.net.

  7. 7.

    imagej.nih.gov/ij.

  8. 8.

    http://vips.sci.univr.it/dataset/grainseg.

References

  1. Badrinarayanan, V., Kendall, A., Cipolla, R.: SegNet: a deep convolutional encoder-decoder architecture for image segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 39(12), 2481–2495 (2017)

    Article  Google Scholar 

  2. Barraud, J.: The use of watershed segmentation and GIS software for textural analysis of thin sections. J. Volcanol. Geoth. Res. 154(1–2), 17–33 (2006)

    Article  Google Scholar 

  3. Van den Berg, E.H., Meesters, A.G.C.A., Kenter, J.A.M., Schlager, W.: Automated separation of touching grains in digital images of thin sections. Comput. Geosci. 28(2), 179–190 (2002)

    Article  Google Scholar 

  4. Bradley, D., Roth, G.: Adaptive thresholding using the integral image. J. Graph. Tools 12(2), 13–21 (2007)

    Article  Google Scholar 

  5. Croft, D., Shedd, G., Devasia, S.: Creep, hysteresis, and vibration compensation for piezoactuators: atomic force microscopy application. In: American Control Conference (ACC), vol. 3, pp. 2123–2128. IEEE (2000)

    Google Scholar 

  6. Dijkstra, E.W.: A note on two problems in connection with graphs. Numer. Math. 1(1), 269–271 (1959). https://doi.org/10.1007/BF01386390

    Article  MathSciNet  MATH  Google Scholar 

  7. Gorsevski, P.V., Onasch, C.M., Farver, J.R., Ye, X.: Detecting grain boundaries in deformed rocks using a cellular automata approach. Comput. Geosci. 42, 136–142 (2012). https://doi.org/10.1016/j.cageo.2011.09.008

    Article  Google Scholar 

  8. Izadi, H., Sadri, J., Mehran, N.A.: A new intelligent method for minerals segmentation in thin sections based on a novel incremental color clustering. Comput. Geosci. 81, 38–52 (2015). https://doi.org/10.1016/j.cageo.2015.04.008

    Article  Google Scholar 

  9. Jalili, N., Laxminarayana, K.: A review of atomic force microscopy imaging systems: application to molecular metrology and biological sciences. Mechatronics 14(8), 907–945 (2004). https://doi.org/10.1016/j.mechatronics.2004.04.005

    Article  Google Scholar 

  10. Jiang, F., Gu, Q., Hao, H., Li, N.: Grain segmentation of multi-angle petrographic thin section microscopic images. In: IEEE International Conference on Image Processing (ICIP) (2017). https://doi.org/10.1109/ICIP.2017.8297009

  11. Jiang, F., Gu, Q., Hao, H., Li, N., Wang, B., Hu, X.: A method for automatic grain segmentation of multi-angle cross-polarized microscopic images of sandstone. Comput. Geosci. 115, 143–153 (2018). https://doi.org/10.1016/j.cageo.2018.03.010

    Article  Google Scholar 

  12. Jungmann, M., Pape, H., Wißkirchen, P., Clauser, C., Berlage, T.: Segmentation of thin section images for grain size analysis using region competition and edge-weighted region merging. Comput. Geosci. 72, 33–48 (2014). https://doi.org/10.1016/j.cageo.2014.07.002

    Article  Google Scholar 

  13. Klapetek, P., et al.: Atomic force microscopy characterization of ZnTe epitaxial films. Acta Physica Slovaca 53, 223–230 (2003)

    Google Scholar 

  14. Ladicky, L., Russell, C., Kohli, P., Torr, P.H.S.: Graph cut based inference with co-occurrence statistics. In: Daniilidis, K., Maragos, P., Paragios, N. (eds.) ECCV 2010. LNCS, vol. 6315, pp. 239–253. Springer, Heidelberg (2010). https://doi.org/10.1007/978-3-642-15555-0_18

    Chapter  Google Scholar 

  15. Lu, B., Cui, M., Liu, Q., Wang, Y.: Automated grain boundary detection using the level set method. Comput. Geosci. 35(2), 267–275 (2009)

    Article  Google Scholar 

  16. Meyer, F.: Topographic distance and watershed lines. Sig. Process. 38, 113–125 (1994)

    Article  Google Scholar 

  17. Ross, B.J., Fueten, P., Yashkir, D.Y.: Edge detection of petrographic images using genetic programming. In: Annual Conference on Genetic and Evolutionary Computation (2000)

    Google Scholar 

  18. Yesiloglu-Gultekin, N., Keceli, A.S., Sezer, E.A., Can, A.B., Gokceoglu, C., Bayhan, H.: A computer program (TSecSoft) to determine mineral percentages using photographs obtained from thin sections. Comput. Geosci. 46, 310–316 (2012)

    Article  Google Scholar 

  19. Zhou, Y., Starkey, J., Mansinha, L.: Segmentation of petrographic images by integrating edge detection and region growing. Comput. Geosci. 30(8), 817–831 (2004)

    Article  Google Scholar 

  20. Xia, W., Ni, C., Xie, G.: The influence of surface roughness on wettability of natural/gold-coated ultra-low ash coal particles. Powder Technol. 288, 286–290 (2016). https://doi.org/10.1016/j.powtec.2015.11.029

    Article  Google Scholar 

  21. Rahaman, M.L., Zhang, L., Liu, M., Liu, W.: Surface roughness effect on the friction and wear of bulk metallic glasses. In: 20th International Conference on Wear of Materials. Wear 332–333, 1231–1237 (2015). https://doi.org/10.1016/j.wear.2014.11.030

    Article  Google Scholar 

  22. Chen, Y., Xuan, Y.: The influence of surface roughness on nanoscale radiative heat flux between two objects. J. Quant. Spectrosc. Radiat. Transfer 158, 52–60 (2015). https://doi.org/10.1016/j.jqsrt.2015.01.006

    Article  Google Scholar 

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Correspondence to Nicolò Lanza .

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Lanza, N., Romeo, A., Cristani, M., Setti, F. (2019). Grain Segmentation in Atomic Force Microscopy for Thin-Film Deposition Quality Control. In: Cristani, M., Prati, A., Lanz, O., Messelodi, S., Sebe, N. (eds) New Trends in Image Analysis and Processing – ICIAP 2019. ICIAP 2019. Lecture Notes in Computer Science(), vol 11808. Springer, Cham. https://doi.org/10.1007/978-3-030-30754-7_38

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  • DOI: https://doi.org/10.1007/978-3-030-30754-7_38

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