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KAMIStudio: An Environment for Biocuration of Cellular Signalling Knowledge

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Computational Methods in Systems Biology (CMSB 2019)

Abstract

In this paper we present KAMIStudio, an environment for biocuration of cellular signalling knowledge based on the KAMI framework. The environment provides an interface for the aggregation of decontextualized knowledge about individual protein-protein interactions, its interactive visualization, instantiation into signalling models and the subsequent generation of Kappa scripts that can be further used to study the dynamics of the modelled systems.

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Notes

  1. 1.

    https://github.com/Kappa-Dev/ReGraph, https://github.com/Kappa-Dev/KAMI.

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Correspondence to Eugenia Oshurko .

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Harmer, R., Oshurko, E. (2019). KAMIStudio: An Environment for Biocuration of Cellular Signalling Knowledge. In: Bortolussi, L., Sanguinetti, G. (eds) Computational Methods in Systems Biology. CMSB 2019. Lecture Notes in Computer Science(), vol 11773. Springer, Cham. https://doi.org/10.1007/978-3-030-31304-3_20

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  • DOI: https://doi.org/10.1007/978-3-030-31304-3_20

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-31303-6

  • Online ISBN: 978-3-030-31304-3

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