Skip to main content

A Prior Learning Network for Joint Image and Sensitivity Estimation in Parallel MR Imaging

  • Conference paper
  • First Online:
Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 (MICCAI 2019)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 11767))

Abstract

Parallel imaging is a fast magnetic resonance imaging technique through spatial sensitivity coding using multi-coils. To reconstruct a high quality MR image from under-sampled k-space data, we propose a novel deep network, dubbed as Blind-PMRI-Net, to simultaneously reconstruct the MR image and sensitivity maps in a blind setting for parallel imaging. The Blind-PMRI-Net is a novel deep architecture inspired by the iterative algorithm optimizing a novel energy model for joint image and sensitivity estimation based on image and sensitivity priors. The network is designed to be able to automatically learn these two priors by learning their corresponding proximal operators using convolutional neural networks. Blind-PMRI-Net naturally combines the physical constraint of parallel imaging and prior learning in a single deep architecture. Experiments on a knee MRI dataset show that our network can effectively reconstruct MR image with improved accuracy than previous methods, with fast computational speed. For example, Blind-PMRI-Net takes 0.72 s on GPU to reconstruct 15-channel sensitivity maps and a complex-valued MR image in size of \(320\times 320\).

N. Meng and Y. Yang—Both authors contributed equally to this work.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    http://mridata.org.

  2. 2.

    We empirically found that increasing N is more important than increasing K for network performance, therefore we mainly increase N and set \(K = 1\) for simplicity.

  3. 3.

    https://www.eecs.berkeley.edu/%7Emlustig/Software.html.

References

  1. Aggarwal, H.K., Mani, M.P., Jacob, M.: MoDL: model-based deep learning architecture for inverse problems. IEEE Trans. Med. Imaging 38(2), 394–405 (2019)

    Article  Google Scholar 

  2. Chen, C., Li, Y., Huang, J.: Calibrationless parallel MRI with joint total variation regularization. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013. LNCS, vol. 8151, pp. 106–114. Springer, Heidelberg (2013). https://doi.org/10.1007/978-3-642-40760-4_14

    Chapter  Google Scholar 

  3. Griswold, M.A., et al.: Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magn. Reson. Med. 47(6), 1202–1210 (2002)

    Article  Google Scholar 

  4. Hammernik, K., et al.: Learning a variational network for reconstruction of accelerated MRI data. Magn. Reson. Med. 79(6), 3055–3071 (2018)

    Article  Google Scholar 

  5. Kwon, K., Kim, D., Park, H.: A parallel MR imaging method using multilayer perceptron. Med. Phys. 44(12), 6209–6224 (2017)

    Article  Google Scholar 

  6. Liang, D., Liu, B., Wang, J., Ying, L.: Accelerating SENSE using compressed sensing. Magn. Reson. Med. 62(6), 1574–1584 (2009)

    Article  Google Scholar 

  7. Lustig, M., Pauly, J.M.: SPIRiT: iterative self-consistent parallel imaging reconstruction from arbitrary k-space. Magn. Reson. Med. 64(2), 457–471 (2010)

    Google Scholar 

  8. Pruessmann, K.P., Weiger, M., Scheidegger, M.B., Boesiger, P.: SENSE: sensitivity encoding for fast MRI. Magn. Reson. Med. 42(5), 952–962 (1999)

    Article  Google Scholar 

  9. Schlemper, J., et al.: A deep cascade of convolutional neural networks for dynamic MR image reconstruction. IEEE Trans. Med. Imaging 37(2), 491–503 (2018)

    Article  Google Scholar 

  10. She, H., et al.: Sparse BLIP: BLind iterative parallel imaging reconstruction using compressed sensing. Magn. Reson. Med. 71(2), 645–660 (2014)

    Article  MathSciNet  Google Scholar 

  11. Uecker, M., et al.: ESPIRiT-an eigenvalue approach to autocalibrating parallel MRI: where SENSE meets GRAPPA. Magn. Reson. Med. 71(3), 990–1001 (2014)

    Article  Google Scholar 

  12. Wang, S., et al.: Learning joint-sparse codes for calibration-free parallel MR imaging. IEEE Trans. Med. Imaging 37(1), 251–261 (2018)

    Article  Google Scholar 

  13. Ying, L., Sheng, J.: Joint image reconstruction and sensitivity estimation in SENSE (JSENSE). Magn. Reson. Med. 57(6), 1196–1202 (2007)

    Article  Google Scholar 

  14. Zhang, P., Wang, F., Xu, W., Li, Y.: Multi-channel generative adversarial network for parallel magnetic resonance image reconstruction in K-space. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11070, pp. 180–188. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00928-1_21

    Chapter  Google Scholar 

Download references

Acknowledgement

This work was supported by National Natural Science Foundation of China under Grants 11622106, 11690011, 61721002, U1811461.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jian Sun .

Editor information

Editors and Affiliations

1 Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (pdf 4053 KB)

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Meng, N., Yang, Y., Xu, Z., Sun, J. (2019). A Prior Learning Network for Joint Image and Sensitivity Estimation in Parallel MR Imaging. In: Shen, D., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2019. MICCAI 2019. Lecture Notes in Computer Science(), vol 11767. Springer, Cham. https://doi.org/10.1007/978-3-030-32251-9_80

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-32251-9_80

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-32250-2

  • Online ISBN: 978-3-030-32251-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics