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A Heuristic Approach for Solving the Longest Common Square Subsequence Problem

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Computer Aided Systems Theory – EUROCAST 2019 (EUROCAST 2019)

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Abstract

The longest common square subsequence (LCSqS) problem, a variant of the longest common subsequence (LCS) problem, aims at finding a subsequence common to all input strings that is, at the same time, a square subsequence. So far the LCSqS was solved only for two input strings. We present a heuristic approach, based on randomized local search and a hybrid of variable neighborhood search and beam search, to solve the LCSqS for an arbitrary set of input strings. The beam search makes use of a novel heuristic estimation of the approximated expected length of a LCS to guide the search.

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References

  1. Blum, C., Blesa, M.J., López-Ibáñez, M.: Beam search for the longest common subsequence problem. Comput. Oper. Res. 36(12), 3178–3186 (2009)

    Article  MathSciNet  Google Scholar 

  2. Blum, C., Festa, P.: Metaheuristics for String Problems in Bio-Informatics. Wiley, Hoboken (2016)

    Book  Google Scholar 

  3. Djukanovic, M., Raidl, G., Blum, C.: Anytime algorithms for the longest common palindromic subsequence problem. Technical report AC-TR-18-012, Algorithms and Complexity Group, TU Wien (2018)

    Google Scholar 

  4. Huang, K., Yang, C.-B., Tseng, K.-T., et al.: Fast algorithms for finding the common subsequence of multiple sequences. In: Proceedings of the International Computer Symposium, pp. 1006–1011. IEEE Press (2004)

    Google Scholar 

  5. Inoue, T., Inenaga, S., Hyyrö, H., Bannai, H., Takeda, M.: Computing longest common square subsequences. In: Proceedings of CPM 2018–29th Annual Symposium on Combinatorial Pattern Matching. Schloss Dagstuhl-Leibniz-Zentrum für Informatik, Dagstuhl Publishing (2018)

    Google Scholar 

  6. López-Ibáñez, M., Dubois-Lacoste, J., Pérez Cáceres, L., Stützle, T., Birattari, M.: The irace package: iterated racing for automatic algorithm configuration. Oper. Res. Perspect. 3, 43–58 (2016)

    Article  MathSciNet  Google Scholar 

  7. Maier, D.: The complexity of some problems on subsequences and supersequences. J. ACM (JACM) 25(2), 322–336 (1978)

    Article  MathSciNet  Google Scholar 

  8. Mladenović, N., Hansen, P.: Variable neighborhood search. Comput. Oper. Res. 24(11), 1097–1100 (1997)

    Article  MathSciNet  Google Scholar 

  9. Mousavi, S.R., Tabataba, F.: An improved algorithm for the longest common subsequence problem. Comput. Oper. Res. 39(3), 512–520 (2012)

    Article  MathSciNet  Google Scholar 

  10. Wang, Q., Pan, M., Shang, Y., Korkin, D.: A fast heuristic search algorithm for finding the longest common subsequence of multiple strings. In: Proceedings of AAAI 2010–24th AAAI Conference on Artificial Intelligence, pp. 1287–1292 (2010)

    Google Scholar 

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Acknowledgments

We gratefully acknowledge the financial support of the project by the Doctoral Program “Vienna Graduate School on Computational Optimization” funded by the Austrian Science Foundation (FWF) under contract no. W1260-N35.

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Correspondence to Marko Djukanovic .

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Djukanovic, M., Raidl, G.R., Blum, C. (2020). A Heuristic Approach for Solving the Longest Common Square Subsequence Problem. In: Moreno-Díaz, R., Pichler, F., Quesada-Arencibia, A. (eds) Computer Aided Systems Theory – EUROCAST 2019. EUROCAST 2019. Lecture Notes in Computer Science(), vol 12013. Springer, Cham. https://doi.org/10.1007/978-3-030-45093-9_52

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  • DOI: https://doi.org/10.1007/978-3-030-45093-9_52

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  • Print ISBN: 978-3-030-45092-2

  • Online ISBN: 978-3-030-45093-9

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