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Multi-level Light U-Net and Atrous Spatial Pyramid Pooling for Optic Disc Segmentation on Fundus Image

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Ophthalmic Medical Image Analysis (OMIA 2020)

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Abstract

Optic disc (OD) is the main anatomical structures in retinal images. It is very important to conduct reliable OD segmentation in the automatic diagnosis of many fundus diseases. For OD segmentation, the previous studies with stacked convolutional layers and pooling operations often neglect the detailed spatial information. However, this information is vital to distinguish the diversity of the profile of OD and the spatial distribution of vessels. In this paper, we propose a novel OD segmentation network by designing two modules, namely, light U-Net module and atrous convolution spatial pyramid pooling module. We first extract hierarchical features by using ResNet-101 as a base network. Light U-Net module is utilized to learn the intrinsic spatial information effectively and enhance the ability of feature representation in low-level feature maps. Atrous convolution and spatial pyramid pooling module is used to incorporate global spatial information in high-level semantic features. Finally, we integrate the spatial information by feature fusion to get the segmentation results. We estimate the proposed method on two public retinal fundus image datasets (REFUGE and Drishti-GS). For the REFUGE dataset, our model achieves about 2% improvement in the mIoU and Dice over the next best method. For Drishti-GS, our method also outperforms the other state-of-the-art methods with 99.74% Dice and 93.26% mIoU.

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References

  1. Chrástek, R., et al.: Automated segmentation of the optic nerve head for diagnosis of glaucoma. Med. Image Anal. 9, 297–314 (2005)

    Article  Google Scholar 

  2. Kamble, R., Kokare, M., Deshmukh, G., Hussin, F.A., Mériaudeau, F.: Localization of optic disc and fovea in retinal images using intensity based line scanning analysis. Comput. Biol. Med. 87, 382–396 (2017)

    Article  Google Scholar 

  3. Sigut, J., Nunez, O., Fumero, F., Gonzalez, M., Arnay, R.: Contrast based circular approximation for accurate and robust optic disc segmentation in retinal images. PeerJ 5, e3763–e3763 (2017)

    Article  Google Scholar 

  4. Liu, Q., Hong, X., Li, S., Chen, Z., Zhao, G., Zou, B.: A spatial-aware joint optic disc and cup segmentation method. Neurocomputing 359, 285–297 (2019)

    Article  Google Scholar 

  5. Salazar-Gonzalez, A., Kaba, D., Li, Y., Liu, X.: Segmentation of the blood vessels and optic disk in retinal images. IEEE J. Biomed. Health Inform. 18, 1874–1886 (2014)

    Article  Google Scholar 

  6. Joshi, G.D., Sivaswamy, J., Karan, K., Prashanth, R., Krishnadas, S.R.: Vessel bend-based cup segmentation in retinal images. In: 2010 20th International Conference on Pattern Recognition, pp. 2536–2539 (2010)

    Google Scholar 

  7. Cheng, J., et al.: Superpixel classification based optic disc and optic cup segmentation for glaucoma screening. IEEE Trans. Med. Imaging 32, 1019–1032 (2013)

    Article  Google Scholar 

  8. Li, R., Auer, D., Wagner, C., Chen, X.: A generic ensemble based deep convolutional neural network for semi-supervised medical image segmentation. In: 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), pp. 1168–1172 (2020)

    Google Scholar 

  9. Chen, Q., Sun, X., Zhang, N., Cao, Y., Liu, B.: Mini lesions detection on diabetic retinopathy images via large scale CNN features. In: 2019 IEEE 31st International Conference on Tools with Artificial Intelligence (ICTAI), vol. pp. 348–352 (2019)

    Google Scholar 

  10. Bajwa, M.N., et al.: Two-stage framework for optic disc localization and glaucoma classification in retinal fundus images using deep learning. BMC Med. Inform. Decis. Mak. 19, 136 (2019)

    Article  Google Scholar 

  11. Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 3431–3440 (2015)

    Google Scholar 

  12. Maninis, K.-K., Pont-Tuset, J., Arbeláez, P., Van Gool, L.: Deep retinal image understanding. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 140–148. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_17

    Chapter  Google Scholar 

  13. Fu, H., Cheng, J., Xu, Y., Wong, D., Liu, J., Cao, X.: Joint optic disc and cup segmentation based on multi-label deep network and polar transformation. IEEE Trans. Med. Imaging (2018)

    Google Scholar 

  14. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Medical Image Computing and Computer-Assisted Intervention, pp. 234–241 (2015)

    Google Scholar 

  15. Zhang, S., et al.: Attention guided network for retinal image segmentation. In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 797–805, (2019)

    Google Scholar 

  16. Fu, J., et al.: Dual attention network for scene segmentation. In: 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), pp. 3141–3149 (2019)

    Google Scholar 

  17. Gu, Z., et al.: DeepDisc: optic disc segmentation based on atrous convolution and spatial pyramid pooling. In: Stoyanov, D., et al. (eds.) OMIA/COMPAY -2018. LNCS, vol. 11039, pp. 253–260. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00949-6_30

    Chapter  Google Scholar 

  18. Orlando, J.I., Fu, H., Breda, J.B., et al.: Refuge challenge: a unified framework for evaluating automated methods for glaucoma assessment from fundus photographs. Med. Image Anal. 59, 101570 (2020)

    Article  Google Scholar 

  19. Sivaswamy, J., Krishnadas, S.R., Joshi, G.D., Jain, M., Tabish, A.U.S.: Drishti-GS: retinal image dataset for optic nerve head (ONH) segmentation. In: 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI), pp. 53–56 (2014)

    Google Scholar 

  20. Fu, H., et al.: Disc-aware ensemble network for glaucoma screening from fundus image. IEEE Trans. Med. Imaging 37, 2493–2501 (2018)

    Article  Google Scholar 

  21. Chen, H., Qi, X., Yu, L., P.-Heng, A.: DCAN: deep contour-aware networks for accurate gland segmentation (2016)

    Google Scholar 

  22. Wang, S., Yu, L., Yang, X., Fu, C., Heng, P.: Patch-based output space adversarial learning for joint optic disc and cup segmentation. IEEE Trans. Med. Imaging 38, 2485–2495 (2019)

    Article  Google Scholar 

  23. Zhang, Z., Fu, H., Dai, H., Shen, J., Pang, Y., Shao, L.: ET-Net: a generic edge-aTtention guidance network for medical image segmentation. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11764, pp. 442–450. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32239-7_49

    Chapter  Google Scholar 

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Acknowledgements

This work was supported partly by National Natural Science Foundation of China (Nos. 61871274, 61801305 and 81571758), National Natural Science Foundation of Guangdong Province (No. 2020A1515010649 and No. 2019A1515 111205), Guangdong Province Key Laboratory of Popular High Performance Computers (No. 2017B030314073), Guangdong Laboratory of Artificial-Intelligence and Cyber-Economics (SZ), Shenzhen Peacock Plan (Nos. KQTD2016053112051497 and KQTD2015033016104926), Shenzhen Key Basic Research Project (Nos. JCYJ201908 08165209410, 20190808145011259, JCYJ20180507184647636, GJHZ20190822095 414576 and JCYJ20170302153337765, JCYJ20170302150411789, JCYJ2017030214 2515949, GCZX2017040715180580, GJHZ20180418190529516, and JSGG2018050 7183215520), NTUT-SZU Joint Research Program (No. 2020003), Special Project in Key Areas of Ordinary Universities of Guangdong Province (No. 2019KZDZX1015).

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Correspondence to Baiying Lei .

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Liu, W., Lei, H., Xie, H., Zhao, B., Yue, G., Lei, B. (2020). Multi-level Light U-Net and Atrous Spatial Pyramid Pooling for Optic Disc Segmentation on Fundus Image. In: Fu, H., Garvin, M.K., MacGillivray, T., Xu, Y., Zheng, Y. (eds) Ophthalmic Medical Image Analysis. OMIA 2020. Lecture Notes in Computer Science(), vol 12069. Springer, Cham. https://doi.org/10.1007/978-3-030-63419-3_11

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  • DOI: https://doi.org/10.1007/978-3-030-63419-3_11

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