Abstract
Coronavirus disease (COVID-19) outbreak started at Wuhan, China, and it has rapidly spread across the world. In this article, we present a new methodology for network-based analysis of Italian COVID-19 data. The methodology includes the following steps: (i) a parallel methodology to build similarity matrices that represent similar or dissimilar regions with respect to data; (ii) the mapping of similarity matrices into networks where nodes represent Italian regions, and edges represent similarity relationships; (iii) the discovering communities of regions that show similar behaviour. The methodology is general and can be applied to world-wide data about COVID-19. Experiments was performed on real datasets about Italian regions, and they although the limited size of the Italian COVID-19 dataset, a quite linear speed-up was obtained up to six cores.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Blondel, V.D., Guillaume, J.L., Lambiotte, R., Lefebvre, E.: Fast unfolding of communities in large networks. J. Stat. Mech: Theory Exp. 2008(10), P10008 (2008)
Clauset, A., Newman, M.E., Moore, C.: Finding community structure in very large networks. Phys. Rev. E 70(6), 066111 (2004)
Csardi, G., Nepusz, T., et al.: The igraph software package for complex network research. InterJournal Complex Syst. 1695(5), 1–9 (2006)
Fortunato, S., Hric, D.: Community detection in networks: a user guide. Phys. Rep. 659, 1–44 (2016)
Kumar, A.: Modeling geographical spread of COVID-19 in India using network-based approach. medRxiv (2020). https://doi.org/10.1101/2020.04.23.20076489
Kuzdeuov, A., et al.: A network-based stochastic epidemic simulator: controlling COVID-19 with region-specific policies. medRxiv (2020). https://doi.org/10.1101/2020.05.02.20089136
Lai, A., Bergna, A., Acciarri, C., Galli, M., Zehender, G.: Early phylogenetic estimate of the effective reproduction number of SARS-CoV-2. J. Med. Virol. (2020). https://doi.org/10.1002/jmv.25723
Milano, M.: Computing languages for bioinformatics: R. In: Gribskov, M., Nakai, K., Schonbach, C. (eds.) Encyclopedia of Bioinformatics and Computational Biology, vol. 1, pp. 889–895. Elsevier, Oxford (2019)
Milano, M., Cannataro, M.: Statistical and network-based analysis of Italian COVID-19 data: communities detection and temporal evolution. Int. J. Environ. Res. Public Health 17(12), 4182 (2020)
Pons, P., Latapy, M.: Computing communities in large networks using random walks. In: Yolum, I., Güngör, T., Gürgen, F., Özturan, C. (eds.) ISCIS 2005. LNCS, vol. 3733, pp. 284–293. Springer, Heidelberg (2005). https://doi.org/10.1007/11569596_31
Reich, O., Shalev, G., Kalvari, T.: Modeling COVID-19 on a network: super-spreaders, testing and containment. medRxiv (2020). https://doi.org/10.1101/2020.04.30.20081828
Reichardt, J., Bornholdt, S.: Statistical mechanics of community detection. Phys. Rev. E 74(1), 016110 (2006)
Van Dongen, S.: Graph clustering via a discrete uncoupling process. SIAM J. Matrix Anal. Appl. 30(1), 121–141 (2008)
Wu, Z., McGoogan, J.M.: Characteristics of and important lessons from the coronavirus disease 2019 (COVID-19) outbreak in China: summary of a report of 72 314 cases from the Chinese center for disease control and prevention. JAMA (2020). https://doi.org/10.1001/jama.2020.2648
Yang, Z., Algesheimer, R., Tessone, C.J.: A comparative analysis of community detection algorithms on artificial networks. Sci. Rep. 6, 30750 (2016)
Zhu, N., et al.: A novel coronavirus from patients with pneumonia in China, 2019. N. Engl. J. Med. (2020). https://doi.org/10.1056/NEJMoa2001017
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2021 Springer Nature Switzerland AG
About this paper
Cite this paper
Agapito, G., Milano, M., Cannataro, M. (2021). A New Parallel Methodology for the Network Analysis of COVID-19 Data. In: Balis, B., et al. Euro-Par 2020: Parallel Processing Workshops. Euro-Par 2020. Lecture Notes in Computer Science(), vol 12480. Springer, Cham. https://doi.org/10.1007/978-3-030-71593-9_26
Download citation
DOI: https://doi.org/10.1007/978-3-030-71593-9_26
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-71592-2
Online ISBN: 978-3-030-71593-9
eBook Packages: Computer ScienceComputer Science (R0)