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International Conference on Parallel Computing Technologies

PaCT 2021: Parallel Computing Technologies pp 445–450Cite as

The Web Platform for Storing Biotechnologically Significant Properties of Bacterial Strains

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Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 12942))

Abstract

Current biology tasks are impracticable without bioinformatic data processing. Information technologies and the newest computers provide the ability to automatically execute algorithms on an extensive data set and store either strong- or weak-structured data. A well-designed architecture of such data warehouses increases the reproducibility of investigations. However, it is challenging to create a data schema that aids fast search of properties in such warehouses. This paper describes the method and its implementation for storing and processing microbiological and bioinformatical data. The web platform stores genomes in FASTA format, genome annotations in table files that indicate gene coordinates in the genomes, structural and mathematical models to compare different strains and predict new properties.

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Funding

The work was funded by the Kurchatov Genomic Center of the Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences (Novosibirsk, Russia) according to the agreement with the Ministry of Education and Science RF, No. 075-15-2019-1662.

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Authors and Affiliations

  1. Kurchatov Genomics Center Institute of Cytology and Genetics SB RAS, 10, Lavrentiev Avenue, Novosibirsk, 630090, Russia

    Aleksey M. Mukhin, Fedor V. Kazantsev, Alexandra I. Klimenko, Tatiana N. Lakhova, Pavel S. Demenkov & Sergey A. Lashin

  2. Institute of Cytology and Genetics SB RAS, 10, Lavrentiev Avenue, Novosibirsk, 630090, Russia

    Aleksey M. Mukhin, Fedor V. Kazantsev, Alexandra I. Klimenko, Tatiana N. Lakhova, Pavel S. Demenkov & Sergey A. Lashin

  3. Novosibirsk State University, 2, Pirogov street, Novosibirsk, 630090, Russia

    Fedor V. Kazantsev, Alexandra I. Klimenko & Sergey A. Lashin

Authors
  1. Aleksey M. Mukhin
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  2. Fedor V. Kazantsev
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  3. Alexandra I. Klimenko
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  4. Tatiana N. Lakhova
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  5. Pavel S. Demenkov
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  6. Sergey A. Lashin
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Corresponding author

Correspondence to Aleksey M. Mukhin .

Editor information

Editors and Affiliations

  1. Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia

    Victor Malyshkin

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Mukhin, A.M., Kazantsev, F.V., Klimenko, A.I., Lakhova, T.N., Demenkov, P.S., Lashin, S.A. (2021). The Web Platform for Storing Biotechnologically Significant Properties of Bacterial Strains. In: Malyshkin, V. (eds) Parallel Computing Technologies. PaCT 2021. Lecture Notes in Computer Science(), vol 12942. Springer, Cham. https://doi.org/10.1007/978-3-030-86359-3_34

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  • DOI: https://doi.org/10.1007/978-3-030-86359-3_34

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-86358-6

  • Online ISBN: 978-3-030-86359-3

  • eBook Packages: Computer ScienceComputer Science (R0)

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