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Semi-supervised Histological Image Segmentation via Hierarchical Consistency Enforcement

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Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 13432))

Abstract

Acquiring pixel-level annotations for histological image segmentation is time- and labor- consuming. Semi-supervised learning enables learning from the unlabeled and limited amount of labeled data. A challenging issue is the inconsistent and uncertain predictions on unlabeled data. To enforce invariant predictions over the perturbations applied to the hidden feature space, we propose a Mean-Teacher based hierarchical consistency enforcement (HCE) framework and a novel hierarchical consistency loss (HC-loss) with learnable and self-guided mechanisms. Specifically, the HCE takes the perturbed versions of the hierarchical features from the encoder as input to the auxiliary decoders, and encourages the predictions of the auxiliary decoders and the main decoder to be consistent. The HC-loss facilitates the teacher model to generate reliable guidance and enhances the consistency among all the decoders of the student model. The proposed method is simple, yet effective, which can easily be extended to other frameworks. The quantitative and qualitative experimental results indicate the effectiveness of the hierarchical consistency enforcement on the MoNuSeg and CRAG datasets.

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References

  1. Awan, R., et al.: Glandular morphometrics for objective grading of colorectal adenocarcinoma histology images. Sci. Rep. 7(1), 1–12 (2017)

    Article  MathSciNet  Google Scholar 

  2. Chen, L.C., Papandreou, G., Kokkinos, I., Murphy, K., Yuille, A.L.: DeepLab: semantic image segmentation with deep convolutional nets, atrous convolution, and fully connected CRFs. IEEE Trans. Pattern Anal. Mach. Intell. 40(4), 834–848 (2017)

    Article  Google Scholar 

  3. Graham, S., et al.: MILD-Net: minimal information loss dilated network for gland instance segmentation in colon histology images. Med. Image Anal. 52, 199–211 (2019)

    Article  Google Scholar 

  4. He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)

    Google Scholar 

  5. Kumar, N., et al.: A multi-organ nucleus segmentation challenge. IEEE Trans. Med. Imaging 39(5), 1380–1391 (2019)

    Article  Google Scholar 

  6. Li, X., Yu, L., Chen, H., Fu, C.W., Xing, L., Heng, P.A.: Transformation-consistent self-ensembling model for semisupervised medical image segmentation. IEEE Trans. Neural Netw. Learn. Syst. 32(2), 523–534 (2020). https://doi.org/10.1109/TNNLS.2020.2995319

    Article  Google Scholar 

  7. Li, Y., Chen, J., Xie, X., Ma, K., Zheng, Y.: Self-loop uncertainty: a novel pseudo-label for semi-supervised medical image segmentation. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12261, pp. 614–623. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59710-8_60

    Chapter  Google Scholar 

  8. Ouali, Y., Hudelot, C., Tami, M.: Semi-supervised semantic segmentation with cross-consistency training. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 12674–12684 (2020)

    Google Scholar 

  9. Qu, H., Yan, Z., Riedlinger, G.M., De, S., Metaxas, D.N.: Improving Nuclei/Gland instance segmentation in histopathology images by full resolution neural network and spatial constrained loss. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11764, pp. 378–386. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32239-7_42

    Chapter  Google Scholar 

  10. Raza, S.E.A., et al.: Micro-Net: a unified model for segmentation of various objects in microscopy images. Med. Image Anal. 52, 160–173 (2019)

    Article  Google Scholar 

  11. Sahasrabudhe, M., et al.: Self-supervised nuclei segmentation in histopathological images using attention. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12265, pp. 393–402. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59722-1_38

    Chapter  Google Scholar 

  12. Tarvainen, A., Valpola, H.: Mean teachers are better role models: weight-averaged consistency targets improve semi-supervised deep learning results. In: Advances in Neural Information Processing Systems, pp. 1195–1204 (2017)

    Google Scholar 

  13. Verma, V., Lamb, A., Kannala, J., Bengio, Y., Lopez-Paz, D.: Interpolation consistency training for semi-supervised learning. In: Proceedings of the 28th International Joint Conference on Artificial Intelligence, IJCAI 2019, pp. 3635–3641. AAAI Press (2019)

    Google Scholar 

  14. Vu, T.H., Jain, H., Bucher, M., Cord, M., Pérez, P.: ADVENT: adversarial entropy minimization for domain adaptation in semantic segmentation. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2517–2526 (2019)

    Google Scholar 

  15. Wang, Y., et al.: Double-uncertainty weighted method for semi-supervised learning. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12261, pp. 542–551. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59710-8_53

    Chapter  Google Scholar 

  16. Xia, Y., et al.: Uncertainty-aware multi-view co-training for semi-supervised medical image segmentation and domain adaptation. Med. Image Anal. 65, 101766 (2020)

    Article  Google Scholar 

  17. Xiang, T., Zhang, C., Liu, D., Song, Y., Huang, H., Cai, W.: BiO-Net: learning recurrent bi-directional connections for encoder-decoder architecture. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12261, pp. 74–84. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59710-8_8

    Chapter  Google Scholar 

  18. Xie, Y., Lu, H., Zhang, J., Shen, C., Xia, Y.: Deep segmentation-emendation model for gland instance segmentation. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11764, pp. 469–477. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32239-7_52

    Chapter  Google Scholar 

  19. Xie, Y., Zhang, J., Liao, Z., Verjans, J., Shen, C., Xia, Y.: Pairwise relation learning for semi-supervised gland segmentation. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12265, pp. 417–427. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59722-1_40

    Chapter  Google Scholar 

  20. Yu, L., Wang, S., Li, X., Fu, C.-W., Heng, P.-A.: Uncertainty-aware self-ensembling model for semi-supervised 3D left atrium segmentation. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11765, pp. 605–613. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32245-8_67

    Chapter  Google Scholar 

  21. Zhou, Y., Onder, O.F., Dou, Q., Tsougenis, E., Chen, H., Heng, P.-A.: CIA-Net: robust nuclei instance segmentation with contour-aware information aggregation. In: Chung, A.C.S., Gee, J.C., Yushkevich, P.A., Bao, S. (eds.) IPMI 2019. LNCS, vol. 11492, pp. 682–693. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-20351-1_53

    Chapter  Google Scholar 

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Acknowledgments

This work was supported by the Fundamental Research Funds for the Central Universities, the National Natural Science Foundation of China [Grant No. 62072329], and the National Key Technology R &D Program of China [Grant No. 2018YFB1701700].

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Correspondence to Ran Su .

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Jin, Q. et al. (2022). Semi-supervised Histological Image Segmentation via Hierarchical Consistency Enforcement. In: Wang, L., Dou, Q., Fletcher, P.T., Speidel, S., Li, S. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2022. MICCAI 2022. Lecture Notes in Computer Science, vol 13432. Springer, Cham. https://doi.org/10.1007/978-3-031-16434-7_1

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  • DOI: https://doi.org/10.1007/978-3-031-16434-7_1

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-16433-0

  • Online ISBN: 978-3-031-16434-7

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