Skip to main content

STAU-Net: A Spatial Structure Attention Network forĀ 3D Coronary Artery Segmentation

  • Conference paper
  • First Online:
Book cover Clinical Image-Based Procedures (CLIP 2022)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 13746))

Included in the following conference series:

  • 389 Accesses

Abstract

Automated segmentation of coronary artery is critical yet challenging for the detection and quantification of cardiovascular diseases. Considering the limitation of computing power, most existing 3D coronary artery segmentation methods divide original data into patches or 2D slices for segmentation to support the limited GPU memory, thereby causing limited segmentation performance due to the loss of contextual information of coronary artery structure. To solve above issues, this paper proposes a novel model for 3D coronary artery segmentation by enhancing structural information of features. Specifically, the proposed framework consists of a structure attention fusion (STAF) block and up-sample fusion (UF) block. The STAF block utilizes channel attention and spatial attention to enhance the fused feature maps from the output of dilated convolution at adjacent scales, and the UF block offsets the loss contextual information by fusing the feature map of the upper decoder. Also, the framework first resamples the input to a fixed size to implement training and up-sample to original size by customized post-processing at output stage. Compared with other related segmentation networks, the results demonstrate that our method can segment more detailed information of coronary artery tree and achieve better performance.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 44.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 59.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Joseph, P., et al.: Reducing the global burden of cardiovascular disease, part 1: the epidemiology and risk factors. Circ. Res. 121(6), 677ā€“694 (2017)

    ArticleĀ  Google ScholarĀ 

  2. Goo, H.W., et al.: CT of congenital heart disease: normal anatomy and typical pathologic conditions. Radiographics 23(suppl_1), S147ā€“S165 (2003)

    Google ScholarĀ 

  3. Kerkeni, A., Benabdallah, A., Manzanera, A., Bedoui, M.H.: A coronary artery segmentation method based on multiscale analysis and region growing. Comput. Med. Imaging Graph. 48, 49ā€“61 (2016)

    ArticleĀ  Google ScholarĀ 

  4. Lesage, D., Angelini, E.D., Funka-Lea, G., Bloch, I.: Adaptive particle filtering for coronary artery segmentation from 3D CT angiograms. Comput. Vision Image Underst. 151, 29ā€“46 (2016)

    ArticleĀ  Google ScholarĀ 

  5. Nishi, T., et al.: Deep learning-based intravascular ultrasound segmentation for the assessment of coronary artery disease. Int. J. Cardiol. 333, 55ā€“59 (2021)

    ArticleĀ  Google ScholarĀ 

  6. Haskins, G., Kruger, U., Yan, P.: Deep learning in medical image registration: a survey. Mach. Vision Appl. 31(1), 1ā€“18 (2020)

    Google ScholarĀ 

  7. Chen, H., Dou, Q., Yu, L., Qin, J., Heng, P.-A.: VoxResNet: deep voxelwise residual networks for brain segmentation from 3D MR images. Neuroimage 170, 446ā€“455 (2018)

    ArticleĀ  Google ScholarĀ 

  8. ƖztĆ¼rk, Ş: Class-driven content-based medical image retrieval using hash codes of deep features. Biomed. Signal Process. 68, 102601 (2021)

    ArticleĀ  Google ScholarĀ 

  9. ƖztĆ¼rk, Ş: Stacked auto-encoder based tagging with deep features for content-based medical image retrieval. Expert Syst. Appl. 161, 113693 (2020)

    ArticleĀ  Google ScholarĀ 

  10. Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition. CVPR 2015, pp. 3431ā€“3440. IEEE, Boston (2015)

    Google ScholarĀ 

  11. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234ā€“241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    ChapterĀ  Google ScholarĀ 

  12. Li, X., Chen, H., Qi, X., Dou, Q., Fu, C.W., Heng, P.A.: H-DenseUNet: hybrid densely connected UNet for liver and tumor segmentation from CT volumes. Trans. Med. Imaging 37(12), 2663ā€“2674 (2018)

    ArticleĀ  Google ScholarĀ 

  13. ƇiƧek, Ɩ., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424ā€“432. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_49

    ChapterĀ  Google ScholarĀ 

  14. Milletari, F., Navab, N., Ahmadi, S.A.: V-net: fully convolutional neural networks for volumetric medical image segmentation. In: 2016 Fourth International Conference on 3D Vision. 3DV 2016, pp 565ā€“571. IEEE, California (2016)

    Google ScholarĀ 

  15. Liang, D., et al.: Semi 3D-TENet: semi 3D network based on temporal information extraction for coronary artery segmentation from angiography video. Biomed. Signal Process. Control 69, 102894 (2021)

    ArticleĀ  Google ScholarĀ 

  16. Lin, T.Y., DollĆ”r, P., Girshick, R., He, K., Hariharan, B., Belongie, S.: Feature pyramid networks for object detection. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition. CVPR 2017, pp. 2117ā€“2125. IEEE, HI (2017)

    Google ScholarĀ 

  17. Woo, S., Park, J., Lee, J.-Y., Kweon, I.S.: CBAM: convolutional block attention module. In: Ferrari, V., Hebert, M., Sminchisescu, C., Weiss, Y. (eds.) ECCV 2018. LNCS, vol. 11211, pp. 3ā€“19. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-01234-2_1

    ChapterĀ  Google ScholarĀ 

Download references

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Baiying Lei or Longjiang Zhang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

Ā© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Tong, G. et al. (2023). STAU-Net: A Spatial Structure Attention Network forĀ 3D Coronary Artery Segmentation. In: Chen, Y., et al. Clinical Image-Based Procedures. CLIP 2022. Lecture Notes in Computer Science, vol 13746. Springer, Cham. https://doi.org/10.1007/978-3-031-23179-7_5

Download citation

  • DOI: https://doi.org/10.1007/978-3-031-23179-7_5

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-23178-0

  • Online ISBN: 978-3-031-23179-7

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics