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Agent-Based Model for Phenotypic Prediction Using Genomic and Environmental Data

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Part of the book series: Advances in Intelligent Systems and Computing ((AISC,volume 294))

Abstract

One of the means to increase in-field crop yields is the use of software tools to predict future yield values using past in-field trials and plant genetics. The traditional, statistics-based approaches lack environmental data integration and are very sensitive to missing and/or noisy data. In this paper, we show how using a cooperative, adaptive Multi-Agent System can overcome the drawbacks of such algorithms. The system resolves the problem in an iterative way by a cooperation between the constraints, modelled as agents. Results show a good convergence of the algorithm. Complete tests to validate the provided solution quality are still in progress.

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References

  1. Food, of the United Nations, A.O.: State of food and agriculture (2013)

    Google Scholar 

  2. Lorenz, A.J., Chao, S., Asoro, F.G., Heffner, E.L., Hayashi, T., Iwata, H., Smith, K.P., Sorrells, M.E., Jannink, J.L.: Genomic selection in plant breeding: Knowledge and prospects. Advances in Agronomy 110, 77–121 (2011)

    Article  Google Scholar 

  3. Moser, G., Tier, B., Crump, R., Khatkar, M., Raadsma, H.: A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide snp markers. Genetics Selection Evolution 41(1), 56 (2009)

    Article  Google Scholar 

  4. Whittaker, J.C., Thompson, R., Denham, M.C.: Marker-assisted selection using ridge regression. Genetical Research 75, 249–252 (2000)

    Article  Google Scholar 

  5. Hayes, B.J., Visscher, P.M., Goddard, M.E.: Increased accuracy of artificial selection by using the realized relationship matrix. Genetics Research 91, 47–60 (2009)

    Article  Google Scholar 

  6. Ferber, J.: Multi-Agent Systems: An Introduction to Distributed Artificial Intelligence. Addison-Wesley Longman Publishing Co., Inc. (1999)

    Google Scholar 

  7. Capera, D., George, J.P., Gleizes, M.P., Glize, P.: The AMAS Theory for Complex Problem Solving Based on Self-organizing Cooperative Agents. In: International Workshop on Theory And Practice of Open Computational Systems (TAPOCS@WETICE 2003), pp. 389–394. IEEE Computer Society (2003)

    Google Scholar 

  8. Ilin, A., Raiko, T.: Practical approaches to principal component analysis in the presence of missing values. J. Mach. Learn. Res. 11, 1957–2000 (2010)

    MATH  MathSciNet  Google Scholar 

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© 2014 Springer International Publishing Switzerland

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Alameda, S., Bernon, C., Mano, JP. (2014). Agent-Based Model for Phenotypic Prediction Using Genomic and Environmental Data. In: Saez-Rodriguez, J., Rocha, M., Fdez-Riverola, F., De Paz Santana, J. (eds) 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014). Advances in Intelligent Systems and Computing, vol 294. Springer, Cham. https://doi.org/10.1007/978-3-319-07581-5_1

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  • DOI: https://doi.org/10.1007/978-3-319-07581-5_1

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-07580-8

  • Online ISBN: 978-3-319-07581-5

  • eBook Packages: EngineeringEngineering (R0)

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