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Microarray Time Series Modeling and Variational Bayesian Method for Reverse Engineering Gene Regulatory Networks

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Abstract

Gene expression is a complex process controlled by underling biological interactions. One model that tries to explain these relationships at a genetic level is the gene regulatory networks. Uncovering regulatory networks are extremely important for live sciences to understand how genes compete and are associated. Despite measurement methods have been successfully developed within the microarray technique, the analysis of genomic data is difficult due to the vast amount of information considered. We address here the problem of modeling the gene regulatory networks by a novel linear model and we propose a Bayesian approach to learn this structure from microarray time series.

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References

  1. Tienda-Luna, I.M.: Constructing Gene Networks Using Variational Bayesian Variable Selection. Articial Life 14(1), 65–79 (2008)

    Article  Google Scholar 

  2. Ribeiro, A.: A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics. J. Comput. Biol. 13(9), 1630–1639 (2006)

    Article  MathSciNet  Google Scholar 

  3. Beal, M.J., Ghaharamani, Z.: The Variational Bayesian EM Algorithm for Incomplete Data with Application to Scoring Graphical Model Structures. Bayesian Statistics 7 (2003)

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  4. Huang, Y.: Reverse engineering gene regulatory network, a survey of statistical models. SPMAG 26(1), 76–97 (2009)

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© 2014 ICST Institute for Computer Science, Social Informatics and Telecommunications Engineering

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Sánchez-Castillo, M., Luna, I.M.T., Blanco-Navarro, D., Carrión-Pérez, M.C. (2014). Microarray Time Series Modeling and Variational Bayesian Method for Reverse Engineering Gene Regulatory Networks. In: Das, V.V., Elkafrawy, P. (eds) Signal Processing and Information Technology. SPIT 2012. Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering, vol 117. Springer, Cham. https://doi.org/10.1007/978-3-319-11629-7_10

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  • DOI: https://doi.org/10.1007/978-3-319-11629-7_10

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-11628-0

  • Online ISBN: 978-3-319-11629-7

  • eBook Packages: Computer ScienceComputer Science (R0)

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