Abstract
We studied the relations between the triplet frequency dictionaries of organelle genome, and the phylogeny of their bearers. The clusters in 63-dimensional space were identified through K-means, and the clade composition of those clusters has been investigated. Very high regularity in genomes distribution among the clusters was found, in terms of taxonomy. The strong synchrony in evolution of nuclear and organelle genomes manifests through this correlation: the proximity in frequency space was determined over the organelle genomes, while the proximity in taxonomy was determined morphologically. Similar effect is also found in the ensembles of other (say, yeast) genomes.
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References
Bugaenko, N.N., Gorban, A.N., Sadovsky, M.G.: Open Systems & Information Dyn. 5, 265–281 (1998)
Gorban, A.N., Zinovyev, A.Y.: Int. J. of Neural Systems 20, 219 (2010)
Gorban, A.N., Kegl, B., Wünsch, D.C., Zinovyev A.Y. (eds.) Principal Manifolds for Data Visualisation and Dimension Reduction. LNCSE, vol. 58, p. 332. Springer, Heidelberg (2007)
Gorban, A.N., Popova, T.G., Zinovyev, A.Y.: In Silico Biology 3, 471 (2003)
Gorban, A.N., Popova, T.G., Sadovsky, M.G., Wünsch, D.C.: Information content of the frequency dictionaries, reconstruction, transformation and classification of dictionaries and genetic texts. In: Intelligent Engineering Systems through Artificial Neural Networks, 11 — Smart Engineering System Design, pp. 657–663. ASME Press, New York (2001)
Gorban, A.N., Popova, T.G., Sadovsky, M.G.: Open Systems & Information Dyn. 7, 1 (2000)
Fukunaga, K.: Introduction to statistical pattern recognition. 2nd edn., 591 p. Academic Press, London (1990)
Sadovsky, M.G., Shchepanovsky, A.S., Putintzeva Yu, A.: Theory in Biosciences 127, 69 (2008)
Sadovsky, M.G.: J. of Biol. Physics 29, 23 (2003)
Sadovsky, M.G.: Bulletin of Math. Biology 68, 156 (2006)
Shi, Y., Gorban, A.N., Yang, T.Y.: J. Phys. Conf. Ser. 490, 012082 (2014)
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Sadovsky, M., Putintseva, Y., Chernyshova, A., Fedotova, V. (2015). Genome Structure of Organelles Strongly Relates to Taxonomy of Bearers. In: Ortuño, F., Rojas, I. (eds) Bioinformatics and Biomedical Engineering. IWBBIO 2015. Lecture Notes in Computer Science(), vol 9043. Springer, Cham. https://doi.org/10.1007/978-3-319-16483-0_47
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DOI: https://doi.org/10.1007/978-3-319-16483-0_47
Publisher Name: Springer, Cham
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