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Biomedical Concepts Extraction Based on Possibilistic Network and Vector Space Model

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Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 9105))

Abstract

This paper proposes a new approach for indexing biomedical documents based on the combination of a Possibilistic Network and a Vector Space Model. This later carries out partial matching between documents and biomedical vocabularies. The main contribution of the proposed approach is to combine the cosine similarity and the two measures of possibility and necessity to enhance the estimation of the similarity between a document and a given concept. The possibility estimates the extent to which a document is not similar to the concept. The necessity allows the confirmation that the document is similar to the concept. Experiments were carried out on the OSHUMED corpora and showed encouraging results.

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References

  1. Singhal, A.: Modern information retrieval: A brief overview. IEEE Data Engineering Bulletin 24(4), 35–43 (2009)

    Google Scholar 

  2. Nelson, S.J., Johnson, W.D., Humphreys, B.L.: Relationships in Medical Subject Heading. In: Relationships in the Organization of Knowledge, pp. 171–184 (2001)

    Google Scholar 

  3. Ruch, P.: Automatic assignment of biomedical categories: towards a generic approach. Bioinformatics Journal 22(6), 658–664 (2006)

    Article  Google Scholar 

  4. Chebil, W., Soualmia, L.F., Darmoni, S.J.: BioDI: A new approach to improve biomedical documents indexing. In: Decker, H., Lhotská, L., Link, S., Basl, J., Tjoa, A.M. (eds.) DEXA 2013, Part I. LNCS, vol. 8055, pp. 78–87. Springer, Heidelberg (2013)

    Chapter  Google Scholar 

  5. Chebil, W., Soualmia, L.F., Omri, M.N., Darmoni, S.J.: Indexing biomedical documents with a possibilistic network. Journal of the Association for Information Science and Technology (in press, 2015), doi: 10.1002/asi.23435

    Google Scholar 

  6. Dubois, D., Prade, H.: Possibility Theory. Plenum (1988)

    Google Scholar 

  7. Omri, M.N., Chouigui, N.: Measure of similarity between fuzzy concepts for identification of fuzzy user’s requests in fuzzy semantic networks. International Journal of Uncertainty, Fuzziness and Knowledge-Based Systems (IJUFKS) 9(6), 743–748 (2001)

    Article  MATH  Google Scholar 

  8. Boughanem, M., Brini, A., Dubois, D.: Possibilistic networks for information retrieval. International Journal of Approximate Reasoning 50, 957–968 (2009)

    Article  MATH  MathSciNet  Google Scholar 

  9. Chebil, W., Soualmia, L.F., Dahamna, B., Darmoni, S.J.: Indexation automatique de do-cuments en santé: évaluation et analyse de sources d’erreurs. BioMedical Engineering and Research 33(5-6), 129–136 (2012)

    Google Scholar 

  10. Dinh, D., Tamine, L.: Towards a context sensitive approach to searching information based on domain specific knowledge sources. Web Semantics: Science, Services and Agents on the World Wide Web 12-13, 41–52 (2012)

    Google Scholar 

  11. Hliaoutakis, A., Zervanou, K., Petrakis, E.G.M.: The AMTEx approach in the medical document indexing and retrieval application. Data Knowledge Engineering 68(3), 380–392 (2009)

    Article  Google Scholar 

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Correspondence to Wiem Chebil .

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© 2015 Springer International Publishing Switzerland

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Chebil, W., Soualmia, L.F., Omri, M.N., Darmoni, S.J. (2015). Biomedical Concepts Extraction Based on Possibilistic Network and Vector Space Model. In: Holmes, J., Bellazzi, R., Sacchi, L., Peek, N. (eds) Artificial Intelligence in Medicine. AIME 2015. Lecture Notes in Computer Science(), vol 9105. Springer, Cham. https://doi.org/10.1007/978-3-319-19551-3_29

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  • DOI: https://doi.org/10.1007/978-3-319-19551-3_29

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-19550-6

  • Online ISBN: 978-3-319-19551-3

  • eBook Packages: Computer ScienceComputer Science (R0)

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