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Predicting Progression of ALS Disease with Random Frog and Support Vector Regression Method

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Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 9773))

Abstract

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease that involves the degeneration and death of the nerve cells in brain and spinal cord that control voluntary muscle movement. This disease can cause patients struggling with a progressive loss of motor function while typically leaving cognitive functions intact. This paper presents a novel predication method that combines a dimension reduction (integrating partial least square into random frog algorithm) with support vector regression to predict the progression of ALS in the next 3–12 months according to the data collected from the patients over the latest three months. The experiment on the actual data from the PRO-ACT database indicates that the proposed method is effective and robust and can predict the clinical outcome by means of the slope of ALS progression, as measured using the ALS functional rating scale (ALSFRS) and the score used for monitoring ALS patients. Especially, the features selected can effectively distinguish the clinical outcome targets. It is of great benefit to aid clinical care, identify new disease predictors and potentially significantly reduce the costs of future ALS clinical trials.

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References

  1. Kiernan, M.C., Vucic, S., Cheah, B.C., Turner, M.R., Eisen, A., Hardiman, O., Burrell, J.R., Zoing, M.C.: Amyotrophic lateral sclerosis. Lancet 377(9769), 942–955 (2011)

    Article  Google Scholar 

  2. Drigo, D., Verriello, L., Clagnan, E., Eleopra, R., Pizzolato, G., Bratina, A., D’Amico, D., Sartori, A., Mase, G., Simonetto, M., de Lorenzo, L.L., Cecotti, L., Zanier, L., Pisa, F., Barbone, F.: The incidence of amyotrophic lateral sclerosis in Friuli Venezia Giulia, Italy, from 2002 to 2009: a retrospective population-based study. Neuroepidemiology 41(1), 54–61 (2013)

    Article  Google Scholar 

  3. Miller, R.G., Mitchell, J.D., Moore, D.H.: Riluzole for amyotrophic lateral sclerosis (ALS)/motor neuron disease (MND). Cochrane Database Syst. Rev. (3) (2012)

    Google Scholar 

  4. Kuffner, R., Zach, N., Norel, R., Hawe, J., Schoenfeld, D., Wang, L.X., Li, G., Fang, L., Mackey, L., Hardiman, O., Cudkowicz, M., Sherman, A., Ertaylan, G., Grosse-Wentrup, M., Hothorn, T., van Ligtenberg, J., Macke, J.H., Meyer, T., Scholkopf, B., Tran, L., Vaughan, R., Stolovitzky, G., Leitner, M.L.: Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression. Nat. Biotechnol. 33(1), 51–57 (2015)

    Article  Google Scholar 

  5. Cutler, A., Cutler, D.R., Stevens, J.R.: Random forests. Mach. Learn. 45(1), 157–176 (2011)

    Google Scholar 

  6. Li, H.D., Xu, Q.S., Liang, Y.Z.: Random frog: an efficient reversible jump Markov Chain Monte Carlo-like approach for variable selection with applications to gene selection and disease classification. Anal. Chim. Acta 740, 20–26 (2012)

    Article  Google Scholar 

  7. Awad, M., Khanna, R.: Support vector regression. Neural Inf. Proc. Lett. Rev. 11(10), 203–224 (2007)

    Google Scholar 

  8. Jiang, J.H., Berry, R.J., Siesler, H.W., Ozaki, Y.: Wavelength interval selection in multicomponent spectral analysis by moving window partial least-squares regression with applications to mid-infrared and hear-infrared spectroscopic data. Anal. Chem. 74(14), 3555–3565 (2002)

    Article  Google Scholar 

  9. Li, H., Xu, Q., Liang, Y.: libPLS: an integrated library for partial least squares regression and discriminant analysis, PeerJ (2014)

    Google Scholar 

  10. Mordelet, F., Horton, J., Hartemink, A.J., Engelhardt, B.E., Gordan, R.: Stability selection for regression-based models of transcription factor-DNA binding specificity. Bioinformatics 29(13), 117–125 (2013)

    Article  Google Scholar 

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Acknowledgements

This research was supported by the National Natural Science Foundation of China (Grant Nos. 61472467, 60973153 and 61471169) and the Collaboration and Innovation Center for Digital Chinese Medicine of 2011 Project of Colleges and Universities in Hunan Province. What’s more, acknowledge both Prize4 Life and Sage Bionetworks-DREAM for supplied the experiment data.

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Correspondence to Shu-Lin Wang .

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Wang, SL., Li, J., Fang, J. (2016). Predicting Progression of ALS Disease with Random Frog and Support Vector Regression Method. In: Huang, DS., Han, K., Hussain, A. (eds) Intelligent Computing Methodologies. ICIC 2016. Lecture Notes in Computer Science(), vol 9773. Springer, Cham. https://doi.org/10.1007/978-3-319-42297-8_16

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  • DOI: https://doi.org/10.1007/978-3-319-42297-8_16

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-42296-1

  • Online ISBN: 978-3-319-42297-8

  • eBook Packages: Computer ScienceComputer Science (R0)

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