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BioPW: An Interactive Tool for Biological Pathway Visualization on Linked Data

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Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 10367))

Abstract

With the development of Linked Data, large amounts of biological pathway RDF data have been published on the semantic Web. To make these various datasets available to life scientists, we demonstrate an interactive tool, called BioPW, for the biological pathway Linked Data visualization. In contrast to showing the biological pathway data merely from one dataset, our tool, with the Open PHACTS Linked Data API and users’ exploratory interaction, could clearly illustrate the biological pathways with their associated information from multiple perspectives of linked datasets.

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References

  1. Andrejs Abele, J.P.M.: Linking open data cloud diagram. LOD Community (2017). http://lod-cloud.net/, 12

  2. Gray, A.J.G.: Groth: Applying linked data approaches to pharmacology: Architectural decisions and implementation. Semant. Web 5, 101–113 (2012)

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  3. WIKIPEDIA: Linked data. https://en.wikipedia.org/wiki/Linked_data

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Acknowledgments

This work is supported by the National Natural Science Foundation of China (61572353), the Natural Science Foundation of Tianjin (17JCYBJC15400), and the Open Fund Project of State Key Lab. for Novel Software Technology (Nanjing University) (KFKT2015B20).

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Correspondence to Xin Wang .

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© 2017 Springer International Publishing AG

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Liu, Y., Wang, X., Xu, Q. (2017). BioPW: An Interactive Tool for Biological Pathway Visualization on Linked Data. In: Chen, L., Jensen, C., Shahabi, C., Yang, X., Lian, X. (eds) Web and Big Data. APWeb-WAIM 2017. Lecture Notes in Computer Science(), vol 10367. Springer, Cham. https://doi.org/10.1007/978-3-319-63564-4_30

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  • DOI: https://doi.org/10.1007/978-3-319-63564-4_30

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-63563-7

  • Online ISBN: 978-3-319-63564-4

  • eBook Packages: Computer ScienceComputer Science (R0)

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