Abstract
We introduce and study the NP-hard Module Map problem which has as input a graph G with red and blue edges and asks to transform G by at most k edge modifications into a graph which does not contain a two-colored \(K_3\), that is, a triangle with two blue edges and one red edge, a blue \(P_3\), that is, a path on three vertices with two blue edges, and a two-colored \(P_3\), that is, a path on three vertices with one blue and one red edge, as induced subgraph. We show that Module Map can be solved in \(\mathcal {O}(2^k \cdot n^3)\) time on n-vertex graphs and present a problem kernelization with \(\mathcal {O}(k^2)\) vertices.
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References
Agrawal, A., Lokshtanov, D., Mouawad, A.E., Saurabh, S.: Simultaneous feedback vertex set: a parameterized perspective. In: Proceedings of 33rd STACS. LIPIcs, vol. 47, pp. 7:1–7:15. Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik (2016)
Amar, D., Shamir, R.: Constructing module maps for integrated analysis of heterogeneous biological networks. Nucleic Acids Res. 42(7), 4208–4219 (2014)
Bansal, N., Blum, A., Chawla, S.: Correlation clustering. Mach. Learn. 56(1–3), 89–113 (2004)
van Bevern, R., Froese, V., Komusiewicz, C.: Parameterizing edge modification problems above lower bounds. Theory Comput. Syst. 62(3), 739–770 (2018)
Böcker, S., Briesemeister, S., Bui, Q.B.A., Truß, A.: Going weighted: parameterized algorithms for cluster editing. Theor. Comput. Sci. 410(52), 5467–5480 (2009)
Böcker, S., Briesemeister, S., Klau, G.W.: Exact algorithms for cluster editing: evaluation and experiments. Algorithmica 60(2), 316–334 (2011)
Bredereck, R., Komusiewicz, C., Kratsch, S., Molter, H., Niedermeier, R., Sorge, M.: Assessing the computational complexity of multi-layer subgraph detection. In: Fotakis, D., Pagourtzis, A., Paschos, V.T. (eds.) CIAC 2017. LNCS, vol. 10236, pp. 128–139. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-57586-5_12
Chen, J., Molter, H., Sorge, M., Suchý, O.: A parameterized view on multi-layer cluster editing. CoRR abs/1709.09100 (2017)
Downey, R.G., Fellows, M.R.: Fundamentals of Parameterized Complexity. Texts in Computer Science. Springer, London (2013). https://doi.org/10.1007/978-1-4471-5559-1
Fomin, F.V., Kratsch, D.: Exact Exponential Algorithms. Texts in Theoretical Computer Science. An European Association for Theoretical Computer Science Series. Springer, Heidelberg (2010)
Fomin, F.V., Kratsch, S., Pilipczuk, M., Pilipczuk, M., Villanger, Y.: Tight bounds for parameterized complexity of cluster editing. In: STACS. LIPIcs, vol. 20, pp. 32–43. Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik (2013)
Gramm, J., Guo, J., Hüffner, F., Niedermeier, R.: Graph-modeled data clustering: exact algorithms for clique generation. Theory Comput. Syst. 38(4), 373–392 (2005)
Hartung, S., Hoos, H.H.: Programming by optimisation meets parameterised algorithmics: a case study for cluster editing. In: Dhaenens, C., Jourdan, L., Marmion, M.-E. (eds.) LION 2015. LNCS, vol. 8994, pp. 43–58. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-19084-6_5
Itai, A., Rodeh, M.: Finding a minimum circuit in a graph. SIAM J. Comput. 7(4), 413–423 (1978)
Kivelä, M., Arenas, A., Barthelemy, M., Gleeson, J.P., Moreno, Y., Porter, M.A.: Multilayer networks. J. Complex Netw. 2(3), 203–271 (2014)
Komusiewicz, C., Uhlmann, J.: Cluster editing with locally bounded modifications. Discrete Appl. Math. 160(15), 2259–2270 (2012)
Krivánek, M., Morávek, J.: NP-hard problems in hierarchical-tree clustering. Acta Informatica 23(3), 311–323 (1986)
Shamir, R., Sharan, R., Tsur, D.: Cluster graph modification problems. Discrete Appl. Math. 144(1–2), 173–182 (2004)
Ulitsky, I., Shlomi, T., Kupiec, M., Shamir, R.: From E-maps to module maps: dissecting quantitative genetic interactions using physical interactions. Mol. Syst. Biol. 4(1), 209 (2008)
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Sommer, F., Komusiewicz, C. (2018). Parameterized Algorithms for Module Map Problems. In: Lee, J., Rinaldi, G., Mahjoub, A. (eds) Combinatorial Optimization. ISCO 2018. Lecture Notes in Computer Science(), vol 10856. Springer, Cham. https://doi.org/10.1007/978-3-319-96151-4_32
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