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Domain-Specific Concepts and Ontological Reduction within a Data Dictionary Framework

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Data Integration in the Life Sciences (DILS 2004)

Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 2994))

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Abstract

This paper describes a new method for the ontologically based standardization of concepts in the medical domain. As an application of this method we developed a data dictionary which firstly focused on trial-specific context-dependent concepts and relations. The data dictionary has been provided to different medical research networks via the internet by means of the software tool Onto-Builder. It is based on an architecture which includes terminologies, domain-specific ontologies and the top-level categories of GOL. According to our approach top-level concepts are used to build definitions of domain-specific concepts on a firm ground through the process of ontological reduction, which is currently under development and the main ideas of which are outlined in this paper.

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References

  1. Cimino, J.J.: Desiderata for Controlled Medical Vocabularies in the Twenty-First Century. Meth. Inform Med. 37(4-5), 394–403 (1998)

    Google Scholar 

  2. Rector, A.L.: Clinical Terminology: Why Is it so Hard? Meth. Inform Med. 38(4-5), 239–252 (1999)

    Google Scholar 

  3. Heller, B., Herre, H.: Ontological Categories in GOL. Axiomathes 14, 71–90 (2004)

    Article  Google Scholar 

  4. Heller, B., Herre, H.: Formal Ontology and Principles of GOL. Leipzig: Research Group Onto-Med, University of Leipzig; Report No. 1 (2003)

    Google Scholar 

  5. Heller, B., Herre, H.: Research Proposal. Leipzig: Research Group Onto-Med, University of Leipzig; Report No. 2 (2003)

    Google Scholar 

  6. Deutsches Institut für Normung e.V. DIN 2342 Teil 1: Begriffe der Terminologielehre. Berlin: Deutsches Institut für Normung e.V. (October 1992)

    Google Scholar 

  7. International Anatomical Nomenclature Committee. Nomina Anatomica. São Paulo (1997)

    Google Scholar 

  8. Gruber, T.R.: Toward Principles for the Design of Ontologies Used for Knowledge Sharing. International Journal of Human and Computer Studies 43(5/6), 907–928 (1995)

    Article  Google Scholar 

  9. Heller, B., Herre, H., Lippoldt, K., Loeffler, M.: Terminology Management for Clinical Trials (submitted)

    Google Scholar 

  10. Bouquet, P., Ghidini, C., Giunchiglia, F., Blanzieri, E.: Theories and uses of context in knowledge representation and reasoning. Journal of Pragmatics 35, 455–484 (2003)

    Article  Google Scholar 

  11. Booch, G., Jacobson, I., Rumbaugh, J.: The Unified Modeling Language User Guide. Addison-Wesley, Amsterdam (1999)

    Google Scholar 

  12. Guizzardi, G., Herre, H., Wagner, G.: On the General Ontological Foundation of Conceptual Modelling. In: Spaccapietra, S., March, S.T., Kambayashi, Y. (eds.) ER 2002. LNCS, vol. 2503, pp. 65–78. Springer, Heidelberg (2002)

    Chapter  Google Scholar 

  13. Barwise, J., Perry, J.: Situations and Attitudes. Bradvord Books, MIT Press, Cambridge (1983)

    Google Scholar 

  14. Rahm, E., Bernstein, P.A.: A survey of approaches to automatic schema matching. The VLDB Journal 10, 334–350 (2001)

    Article  MATH  Google Scholar 

  15. Heller, B., Herre, H., Loebe, F.: Semantic Transformation of Ontologies (forthcoming)

    Google Scholar 

  16. Heller, B., Herre, H., Loebe, F.: Ontological Reductions Based on Top-Level Ontologies (forthcoming)

    Google Scholar 

  17. Poli, R.: The basic Problem of the Theory of Levels of Reality. Axiomathes 12, 261–283 (2002)

    Article  Google Scholar 

  18. Poli, R.: Ontological methodology. Int. J. Human-Computer Studies 56, 639–644 (2002)

    Article  Google Scholar 

  19. Heller, B., Kuehn, K., Lippoldt, K.: Onto-Builder - A Tool for Building Data Dictionaries. Leipzig: Research Group Onto-Med, University of Leipzig; Report No.3 (2003)

    Google Scholar 

  20. Masolo, C., Borgo, S., Gangemi, A., Guarino, N., Oltramari, A., Schneider, L.: Wonderweb Deliverable D17. Preliminary Report, Version 2.0. Padova [Italy]: ISTC- CNR (2002)

    Google Scholar 

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Heller, B., Herre, H., Lippoldt, K. (2004). Domain-Specific Concepts and Ontological Reduction within a Data Dictionary Framework. In: Rahm, E. (eds) Data Integration in the Life Sciences. DILS 2004. Lecture Notes in Computer Science(), vol 2994. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-24745-6_4

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  • DOI: https://doi.org/10.1007/978-3-540-24745-6_4

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-21300-0

  • Online ISBN: 978-3-540-24745-6

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