Skip to main content

A Novel Method for Gene Selection and Cancer Classification

  • Conference paper
Book cover Advances in Neural Networks - ISNN 2004 (ISNN 2004)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 3174))

Included in the following conference series:

  • 1223 Accesses

Abstract

Accurate diagnosis among a group of histologically similar cancers is a challenging issue in clinical medicine. Microarray technology brings new inspiration in solving this problem on genes level. In this paper, a novel gene selection method is proposed and a BP classifier is constructed for gene expression-based cancer classification. By testing on the open leukemia data set, it shows excellent classification performance. 100% classification accuracy is achieved when 46 informative genes are selected. Reducing genes number to 6, only a sample is misclassified. This study provides a reliable method for molecular cancer classification, and may offer insights into biological and clinical researches.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Golub, T.R., Slonim, D.K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J.P., Coller, H., Loh, M.L., Downing, J.R., Caligiuri, M.A., Bloomfield, C.D., Lander, E.S.: Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science 286, 531–537 (1999)

    Article  Google Scholar 

  2. Xiong, M., Li, W., Zhao, J., Jin, L., Boerwinkle, E.: Feature(Gene) selection in gene expression-based tumor classification. Molecular Genetics and Metabolism 73, 239–247 (2001)

    Article  Google Scholar 

  3. Cho, J., Lee, D., Park, J.H., Lee, I.: New gene selection method for classification of cancer subtypes considering within-class variation. FEBS 551, 3–7 (2003)

    Article  Google Scholar 

  4. Fu, L.M., Fu-Liu, C.S.: Multi-class cancer subtype classification based on gene expression signatures with reliability analysis. FEBS 561, 186–190 (2004)

    Article  Google Scholar 

  5. Keller, A., Schummer, L., Hood, L., Ruzzo, W.: Bayesian classification of DNA array expression data. Technical Report University of Washington (August 2000)

    Google Scholar 

  6. Ben-Dor, A., et al.: Tissue classification with gene expression profiles. In: Proceedings of the Fourth Annual International Conference of Computational Molecular Biology, Tokyo,Japan (2000)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2004 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Yan, H., Yi, Z. (2004). A Novel Method for Gene Selection and Cancer Classification. In: Yin, FL., Wang, J., Guo, C. (eds) Advances in Neural Networks - ISNN 2004. ISNN 2004. Lecture Notes in Computer Science, vol 3174. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-28648-6_74

Download citation

  • DOI: https://doi.org/10.1007/978-3-540-28648-6_74

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-22843-1

  • Online ISBN: 978-3-540-28648-6

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics