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Quantitative Morphodynamic Analysis of Time-Lapse Imaging by Edge Evolution Tracking

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Neural Information Processing (ICONIP 2007)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 4985))

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Abstract

To perform morphodynamic profiling from time lapse images of neurite outgrowth, we developed an edge evolution tracking (EET) algorithm, by which cell boundary movements including an arbitrary complex boundary transition are quantified. This algorithm enables us to estimate temporal evolution of cellular edge, and thus to trace the transition of any objective edge movements. We show advantages of EET by comparing it with the other two methods on an artificial data set that imitates neural outgrowth. We also demonstrate the usefulness of our EET by applying it to a data set of time-lapse imaging of neural outgrowth. The results show verification of quantitative profiling for arbitrary complex cell boundary movements.

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References

  1. Aoki, K., Nakamura, T., Matsuda, M.: Spatio-temporal Regulation of Rac1 and Cdc42 Activity during Nerve Growth Factor-induced Neurite Outgrowth in PC12 Cells. J. Biol. Chem. 279(1), 713–719 (2004)

    Article  Google Scholar 

  2. Betz, T., Lim, D., et al.: Neuronal Growth: a Bistable A Stochastic Process. Phys. Rev. Lett. 96(9), 098103 (2006)

    Google Scholar 

  3. Cham, T., Cipolla, R.: Automated B-Spline Curve Representation Incorporating MDL and Error-Minimizing Control Point Insertion Strategies. IEEE Trans. on Pattern Analysis and Machine Intelligence 21(1), 49–53 (1999)

    Article  Google Scholar 

  4. Dent, E.W., Gertler, F.B.: Cytoskeletal Dynamics and Transport in Growth Cone Motility and Axon Guidance. Neuron. 40(2), 209–227 (2003)

    Article  Google Scholar 

  5. Dotti, C.G., Sullivan, C.A., et al.: The Establishment of Polarity by Hippocampal Neurons in Culture. J. Neurosci. 8(4), 1454–1468 (1988)

    Google Scholar 

  6. Dubin-Thaler, B.J., Giannone, G., Döbereiner, H., Sheetz, M.P.: Nanometer Analysis of Cell Spreading on Matrix-Coated Surfaces Reveals Two Distinct Cell States and STEPs. Biophys. J. 86(3), 1794–1806 (2004)

    Article  Google Scholar 

  7. Dunn, G.A., Zicha, D.: Dynamics of Fibroblast Spreading. J. Cell. Sci. 108, 1239–1249 (1995)

    Google Scholar 

  8. Machacek, M., Danuser, G.: Morphodynamic Profiling of Protrusion Phenotypes. Biophys. J. 90(4), 1439–1452 (2006)

    Article  Google Scholar 

  9. Skaliora, I., Adams, R., Blakemore, C.: Morphology and Growth Patterns of Developing Thalamocortical Axons. J. Neurosci. 20(10), 3650–3662 (2000)

    Google Scholar 

  10. Woo, S., Gomez, M.T.: Rac1 and RhoA Promote Neurite Outgrowth through Formation and Stabilization of Growth Cone Point Contacts. J. Neurosci. 26(5), 1418–1428 (2006)

    Article  Google Scholar 

  11. Yamamoto, N., Higashi, S., Toyama, K.: Stop and Branch Behaviors of Geniculocortical Axons: A Time-Lapse Study in Organotypic Cocultures. J. Neurosci. 17(10), 3653–3663 (1997)

    Google Scholar 

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Masumi Ishikawa Kenji Doya Hiroyuki Miyamoto Takeshi Yamakawa

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© 2008 Springer-Verlag Berlin Heidelberg

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Tsukada, Y., Sakumura, Y., Ishii, S. (2008). Quantitative Morphodynamic Analysis of Time-Lapse Imaging by Edge Evolution Tracking. In: Ishikawa, M., Doya, K., Miyamoto, H., Yamakawa, T. (eds) Neural Information Processing. ICONIP 2007. Lecture Notes in Computer Science, vol 4985. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-69162-4_85

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  • DOI: https://doi.org/10.1007/978-3-540-69162-4_85

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-69159-4

  • Online ISBN: 978-3-540-69162-4

  • eBook Packages: Computer ScienceComputer Science (R0)

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