Skip to main content

Multipopulation Genetic Algorithms: A Tool for Parameter Optimization of Cultivation Processes Models

  • Conference paper
Numerical Methods and Applications (NMA 2006)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 4310))

Included in the following conference series:

Abstract

This paper endeavors to show that genetic algorithms, namely Multipopulation genetic algorithms (MpGA), are of great utility in cases where complex cultivation process models have to be identified and, therefore, rational choices have to be made. A system of five ordinary differential equations is proposed to model biomass growth, glucose utilization and acetate formation. Parameter optimization is carried out using experimental data set from an E. coli cultivation. Several conventional algorithms for parameter identification (Gauss-Newton, Simplex Search and Steepest Descent) are compared to the MpGA. A general comment on this study is that traditional optimization methods are generally not universal and the most successful optimization algorithms on any particular domain, especially for the parameter optimization considered here. They have been fairly successful at solving problems of type which exhibit bad behavior like multimodal or nondifferentiable for more conventional based techniques.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Cant’u-Paz, E.: Designing scalable multi-population parallel genetic algorithms. IllGAL Report 98009, The University of Illinois (1998)

    Google Scholar 

  2. Chipperfield, A.J., Fleming, P.J., Pohlheim, H., Fonseca, C.M.: Genetic algorithm toolbox for use with MATLAB. Department of Automatic Control and System Engineering, University of Sheffield, U.K. (1994)

    Google Scholar 

  3. Contiero, J., et al.: Effects of mutations in acetate metabolism on high-cell-density growth of Escherichia coli. Journal of Industrial Microbiology and Biotechnology 24, 421–430 (2000)

    Article  Google Scholar 

  4. Dorigo, M., Di Caro, G.: The ant colony optimization meta-heuristic. In: Corne, D., Dorigo, M., Glover, F. (eds.) New Idea in Optimization, McGraw-Hill, pp. 11–32. McGraw-Hill, New York (1999)

    Google Scholar 

  5. Fidanova, S.: Ant colony optimization: Additional reinforcement and convergence. Tech. report IRIDIA-2002-30, Free university of Bruxelles, Belgium, 12

    Google Scholar 

  6. Georgieva, O., Arndt, M., Hitzmann, B.: Modelling of Escherichia coli fed-batch fermentation. In: Bioprocess Systems’2001, Sofia, Bulgaria, October 1–3, pp. 61–64 (2001)

    Google Scholar 

  7. Glover, F., Kochenberger, G.A.: Handbook of metaheuristics. Kluwer Academic Publishers, Dordrecht (2003)

    MATH  Google Scholar 

  8. Goldberg, D.: Genetic algorithms in search, optimization and machine learning. Addison-Wesley, Reading (1989)

    MATH  Google Scholar 

  9. Levisauskas, D., et al.: Model-based optimization of viral capsid protein production in fed-batch culture of recombinant Escherichia coli. Bioprocess and Biosystems Engineering 25, 255–262 (2003)

    Google Scholar 

  10. Raidl, G.R.: A unified view on hybrid metaheuristics. In: Almeida, F., et al. (eds.) HM 2006. LNCS, vol. 4030, Springer, Heidelberg (2006)

    Chapter  Google Scholar 

  11. Siarry, P., Petrowski, A., Bessaou, M.: A multipopulation genetic algorithm aimed at multimodal optimization. Advances in Engineering Software 33(4), 207–213 (2002)

    Article  MATH  Google Scholar 

  12. Srinivas, M., Patnaik, L.M.: Genetic algorithms: A survey. In: IEEE Computer, 17–26 (1994)

    Google Scholar 

  13. Yi, W., Liu, Q., He, Y.: Dynamic distributed genetic algorithms. In: Congress on Evolutionary Computation (CEC’2000), San Diego, California, USA, July 16–19 (2000)

    Google Scholar 

  14. Zelic, B., et al.: Modeling of the pyruvate production with Escherichia coli in a fed-batch bioreactor. Bioprocess and Biosystems Engineering 26, 249–258 (2004)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Todor Boyanov Stefka Dimova Krassimir Georgiev Geno Nikolov

Rights and permissions

Reprints and permissions

Copyright information

© 2007 Springer Berlin Heidelberg

About this paper

Cite this paper

Roeva, O. (2007). Multipopulation Genetic Algorithms: A Tool for Parameter Optimization of Cultivation Processes Models. In: Boyanov, T., Dimova, S., Georgiev, K., Nikolov, G. (eds) Numerical Methods and Applications. NMA 2006. Lecture Notes in Computer Science, vol 4310. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-70942-8_30

Download citation

  • DOI: https://doi.org/10.1007/978-3-540-70942-8_30

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-70940-4

  • Online ISBN: 978-3-540-70942-8

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics