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Kernel-Based Manifold Learning for Statistical Analysis of Diffusion Tensor Images

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Information Processing in Medical Imaging (IPMI 2007)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 4584))

Abstract

Diffusion tensor imaging (DTI) is an important modality to study white matter structure in brain images and voxel-based group-wise statistical analysis of DTI is an integral component in most biomedical applications of DTI. Voxel-based DTI analysis should ideally satisfy two desiderata: (1) it should obtain a good characterization of the statistical distribution of the tensors under consideration at a given voxel, which typically lie on a non-linear submanifold of \(\Re^6\), and (2) it should find an optimal way to identify statistical differences between two groups of tensor measurements, e.g., as in comparative studies between normal and diseased populations. In this paper, extending previous work on the application of manifold learning techniques to DTI, we shall present a kernel-based approach to voxel-wise statistical analysis of DTI data that satisfies both these desiderata. Using both simulated and real data, we shall show that kernel principal component analysis (kPCA) can effectively learn the probability density of the tensors under consideration and that kernel Fisher discriminant analysis (kFDA) can find good features that can optimally discriminate between groups. We shall also present results from an application of kFDA to a DTI dataset obtained as part of a clinical study of schizophrenia.

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References

  1. LeBihan, D., Mangin, J.F., et al.: Diffusion tensor imaging: Concepts and applications. J. of Magnetic Resonance Imaging 13, 534–546 (2001)

    Article  Google Scholar 

  2. Wu, Y.C., Field, A.S., et al.: Quantitative analysis of diffusion tensor orientation: Theoretical framework. Magnetic Resonance in Medicine 52, 1146–1155 (2004)

    Article  Google Scholar 

  3. Lenglet, C., Rousson, M., Deriche, R., Faugeras, O.: Statistics on the manifold of multivariate normal distributions: Theory and application to diffusion tensor MRI processing. Journal of Math. Imaging and Vision 25(3), 423–444 (2006)

    Article  Google Scholar 

  4. Fletcher, P.T., Joshi, S.: Principal geodesic analysis on symmetric spaces: Statistics of diffusion tensors. In: Sonka, M., Kakadiaris, I.A., Kybic, J. (eds.) Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis. LNCS, vol. 3117, pp. 87–98. Springer, Heidelberg (2004)

    Google Scholar 

  5. Verma, R., Davatzikos, C.: Manifold based analysis of diffusion tensor images using isomaps. In: IEEE Int. Symp. on Biomed, Imaging, pp. 790–793. IEEE, Washington, DC, USA (2006)

    Chapter  Google Scholar 

  6. Burges, C.: Geometric Methods for Feature Extraction and Dimensional Reduction. In: Data Mining and Knowledge Discovery Handbook, Kluwer Academic Publishers, Dordrecht (2005)

    Google Scholar 

  7. Zhang, H., Yushkevich, P., et al.: Deformable registration of diffusion tensor MR images with explicit orientation optimization. Medical Image Analysis 10(5), 764–785 (2006)

    Article  Google Scholar 

  8. Cao, Y., Miller, M., Mori, S., Winslow, R., Younes, L.: Diffeomorphic matching of diffusion tensor images. In: CVPR-MMBIA, 67 (2006)

    Google Scholar 

  9. Xu, D., Mori, S., Shen, D., van Zijl, P., Davatzikos, C.: Spatial normalization of diffusion tensor fields. Magnetic Resonance in Medicine 50(1), 175–182 (2003)

    Article  Google Scholar 

  10. Scholkopf, B., Smola, A.: Learning with Kernels. The MIT Press, Cambridge, MA (2002)

    Google Scholar 

  11. Girolami, M.: Orthogonal series density estimation and the kernel eigenvalue problem. Neural Computation 14(3), 669–688 (2002)

    Article  MATH  Google Scholar 

  12. Kim, S.J., Magnani, A., Boyd, S.: Optimal kernel selection in kernel Fisher discriminant analysis. In: ACM Int. Conf. on Machine Learning 2006, ACM Press, New York (2006)

    Google Scholar 

  13. Saul, L.K., Weinberger, K.Q., Ham, J.H., Sha, F., Lee, D.D.: Spectral methods for dimensionality reduction. In: Semisupervised Learning, MIT Press, Cambridge, MA (2006)

    Google Scholar 

  14. Arsigny, V., Fillard, P., et al.: Medical Image Computing and Computer-Assisted Intervention. In: Duncan, J.S., Gerig, G. (eds.) MICCAI 2005. LNCS, vol. 3749, pp. 115–122. Springer, Heidelberg (2005)

    Google Scholar 

  15. Genovese, C., Lazar, N., Nichols, T.: Thresholding of statistical maps in functional neuroimaging using the false discovery rate. NeuroImage 15, 870–878 (2002)

    Article  Google Scholar 

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Nico Karssemeijer Boudewijn Lelieveldt

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Khurd, P., Verma, R., Davatzikos, C. (2007). Kernel-Based Manifold Learning for Statistical Analysis of Diffusion Tensor Images. In: Karssemeijer, N., Lelieveldt, B. (eds) Information Processing in Medical Imaging. IPMI 2007. Lecture Notes in Computer Science, vol 4584. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-73273-0_48

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  • DOI: https://doi.org/10.1007/978-3-540-73273-0_48

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-73272-3

  • Online ISBN: 978-3-540-73273-0

  • eBook Packages: Computer ScienceComputer Science (R0)

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