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An Improved Population Migration Algorithm for the Prediction of Protein Folding

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Advances in Neural Networks – ISNN 2009 (ISNN 2009)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 5553))

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Abstract

This paper discusses the calculating problem about protein-folding lattice model and bings up the Improved Population Migration Algorithm. The algorithm adds the idea of the Genetic Algorithm and the Immune Algorithm into the framework of the Population Migration Algorithm. The experiment results show that the Improved Population Migration Algorithm has strong global search capability and stability and can be obtained better solution than the existing algorithm.

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References

  1. Lau, K., Dill, A.: A Lattice Statistical Mechanics Model of the Conformational and Sequence Spaces of Proteins. Macromolecules 22, 3986–3997 (1989)

    Article  Google Scholar 

  2. Hinds, D.A., Levitt, M.: Exploring Conformational Space with a Simple Lattice Model for Protein Structure. J. Mol. Biol. 243, 668–682 (1994)

    Article  Google Scholar 

  3. Niu, X.H., Li, N.N.: Immune Algorithm for the Prediction of Protein Folding. J. of Math. 24, 313–316 (2004)

    MATH  Google Scholar 

  4. Zhou, Y., Mao, Z.: A New Search Algorithm for Global Optimization:Population Migration Algorithm. Journal of South China Universty of Technology 31, 1–5 (2003)

    Google Scholar 

  5. Zhou, Y.Y., Mao, Z.Y.: A New Algorithm for Population Migration Optimization. Journal of South China Universty of Technology 31, 41–43 (2003)

    Google Scholar 

  6. Chen, M., Huang, W.Q.: Heuristic Algorithm for Off-lattice Protein Folding Problem. J. Zhejiang Univ. 7, 7–12 (2006)

    Article  Google Scholar 

  7. Backofen, R.: The Protein Structure Prediction Problem: A Constraint Optimization Approach using a New Lower Bound. Constraints 6, 223–255 (2001)

    Article  MathSciNet  MATH  Google Scholar 

  8. Kim, S.Y., Lee, S.B., Lee, J.: Structure optimization by conformational space annealing in an off-lattice protein model. Phys. Rev. 72, 11–16 (2005)

    Google Scholar 

  9. Liang, F.M.: Annealing Contour Moonte Carlo Algorithm for Structure Optimization in an Off-lattice Protein Model. J. Chem. Phys. 120, 6756–6763 (2004)

    Article  Google Scholar 

  10. Hsu, H.P., Mehra, V., Nadler, W., Grassberger, P.: Growth-based Optimization Algorithm for Lattice Heteropolymers. Phys. Rev. E 68, 11–13 (2003)

    Google Scholar 

  11. Hsu, H.P., Mehra, V., Nadler, W., Grassberger, P.: Structure Optimization in an Off-lattice Protein Model. Phys. Rev. E 68, 77–80 (2003)

    Google Scholar 

  12. Ising, E.: Beitrag Zur Theorie des Ferromagnetisms. Z. Physik. 31, 253–258 (1925)

    Article  Google Scholar 

  13. Heisenberg, W.: Zur Theorie des Ferromagnetismus. Z. Physik. 49, 619–636 (1928)

    Article  MATH  Google Scholar 

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Authors and Affiliations

  1. College of Science, Huazhong Agriculture University, Wuhan, 430070, China

    Huafeng Chen & Jianyong Wang

Authors
  1. Huafeng Chen
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  2. Jianyong Wang
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Editor information

Editors and Affiliations

  1. Departamento de Control Automático, CINVESTAV-IPN, A.P. 14-740, Av.IPN 2508, 07360, México D.F., México

    Wen Yu

  2. Deptartment of Electrical and Computer Engineering, Stevens Institute of Technology, Hoboken, USA

    Haibo He

  3. Dept. of Electrical and Computer Engineering, South Dakota School of Mines & Technology, 501 E. St. Joseph Street, SD 57701, Rapid City, USA

    Nian Zhang

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© 2009 Springer-Verlag Berlin Heidelberg

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Chen, H., Wang, J. (2009). An Improved Population Migration Algorithm for the Prediction of Protein Folding. In: Yu, W., He, H., Zhang, N. (eds) Advances in Neural Networks – ISNN 2009. ISNN 2009. Lecture Notes in Computer Science, vol 5553. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-01513-7_72

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  • DOI: https://doi.org/10.1007/978-3-642-01513-7_72

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-01512-0

  • Online ISBN: 978-3-642-01513-7

  • eBook Packages: Computer ScienceComputer Science (R0)

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