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International Work-Conference on Artificial Neural Networks

IWANN 2009: Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living pp 1092–1096Cite as

Current Efforts to Integrate Biological Pathway Information

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Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 5518))

Abstract

PathJam is a new comprehensive and freely accessible web-server application integrating scattered human pathway annotation from several public sources. The tool has been designed to be intuitive for wet-lab users providing statistical enrichment analysis of pathway annotation for a given gene list of interest. Results are displayed in several interactive and downloadable views (graphs, spread-sheets, etc.) facilitating the biological interpretation of the gene lists. Moreover, PathJam allows users to build their own gene sets files in order to use them in gene set enrichment-based analysis. Finally, a simplified version of PathJam has been also implemented as a widget and is currently available for CARGO users.

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Author information

Authors and Affiliations

  1. ESEI: Escuela Superior de Ingeniería Informática, University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004, Ourense, Spain

    Daniel Glez-Peña & Florentino Fdez-Riverola

  2. Informatics Unit, Complexo Hospitalario de Ourense, C/ Ramón Puga 54, 32005, Ourense, Spain

    Rubén Domínguez

  3. Bioinformatics Unit (UBio), Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fernández Almagro 3, 28029, Madrid, Spain

    Gonzalo Gómez-López & David G. Pisano

Authors
  1. Daniel Glez-Peña
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  2. Rubén Domínguez
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  3. Gonzalo Gómez-López
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  4. David G. Pisano
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  5. Florentino Fdez-Riverola
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Editor information

Editors and Affiliations

  1. Graduate School of Engineering, Osaka Prefecture University, Osaka, Japan

    Sigeru Omatu

  2. Department of Informatics / CCTC, University of Minho, Braga, Portugal

    Miguel P. Rocha

  3. MAmI Research Lab, University of Castilla-La Mancha,, Ciudad Real, Spain

    José Bravo

  4. Department of Informatics, University of Vigo, Ourense, Spain

    Florentino Fernández

  5. Grupo de Investigación GICAP, Área de Lenguajes Higher Polytechnic School, Universidad de Burgos, Burgos, Spain

    Emilio Corchado

  6. Higher Polytechnic School, University of Burgos, Burgos, Spain

    Andrés Bustillo

  7. Department of Informatics, University of Salamanca, Salamanca, Spain

    Juan M. Corchado

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© 2009 Springer-Verlag Berlin Heidelberg

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Glez-Peña, D., Domínguez, R., Gómez-López, G., Pisano, D.G., Fdez-Riverola, F. (2009). Current Efforts to Integrate Biological Pathway Information. In: Omatu, S., et al. Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living. IWANN 2009. Lecture Notes in Computer Science, vol 5518. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-02481-8_165

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  • DOI: https://doi.org/10.1007/978-3-642-02481-8_165

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-02480-1

  • Online ISBN: 978-3-642-02481-8

  • eBook Packages: Computer ScienceComputer Science (R0)

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