Abstract
We propose a method for the separation of long DNA molecules, based on elastomeric nanochannels with tunable cross section. These nanoconfinement structures can be used to stretch DNA molecules and lower their conformational entropy. The sieving mechanism of entropic recoil, proposed by Cabodi et al. [1], will be implemented using an array of elastomeric nanocheannels. Structures of various dimensions are fabricated taking advantage of replica molding techniques, starting from Focused Ion Beam (FIB) patterned silicon substrates. Poly(dimethylsiloxane) (PDMS) and hard-PDMS [2] are used to replicate the features on the silicon mold. After plasma oxidation the nanochannels are sealed using a glass cover slip. A piezoelectric system will be integrated on the device in order to exploit the elastomeric propertis of PDMS, reversibly deform the nanochannels and tune their cross section. This system will allow a dynamic variation of the confinement conditions affecting molecules mobility inside the nanochannels.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Cabodi, M., Turner, S.W.P., Craighead, H.G.: Entropic recoil separation of long DNA molecules. Anal. Chem. 74, 5169–5174 (2002)
Schmid, H., Michel, B.: Siloxane Polymers for High-Resolution, High-Accuracy Soft Lithography. Macromolecules 33, 3042–3049 (2000)
Han, J., Craighead, H.G.: Entropic trapping and sieving of long DNA molecules in a nanofluidic channel. J. Vac. Sci. Technol. A 17(4), 2142–2147 (1999)
Turner, S.W., Cabodi, M., Craighead, H.G.: Confinement-Induced Entropic Recoil of Single DNA Molecules in a Nanofluidic Structure. Phys. Rev. Lett. 88(12), 1281031–1281034 (2002)
Mannion, J.T., Reccius, C.H., Cross, J.D., Craighead, H.G.: Conformational Analysis of Single DNA Molecules Undergoing Entropically Induced Motion in Nanochannels. Biophys. J. 90, 4538–4545 (2006)
Fu, J., Schoch, R.B., Stevens, A.L., Tannenbaum, S.R., Han, J.: A patterned anisotropic nanofluidic sieving structure for continuous-flow separation of DNA and proteins. Nat. Nanotechnol. 2, 121–128 (2007)
Huh, D., Mills, K.L., Zhu, X., Burns, M.A., Thouless, M.D., Takayama, S.: Tuneable elastomeric nanochannels for nanofluidic manipulation. Nat. Mater. 6, 424–428 (2007)
Park, K.D., Lee, S.W., Takama, N., Fujii, T., Kim, B.J.: Arbitrary-shaped nanochannels fabricated by polymeric deformation to achieve single DNA stretching. Microelectron. Eng. 86, 1385–1388 (2009)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2009 ICST Institute for Computer Science, Social Informatics and Telecommunications Engineering
About this paper
Cite this paper
Angeli, E., Manneschi, C., Repetto, L., Firpo, G., Boragno, C., Valbusa, U. (2009). Fabrication of Elastomeric Nanofluidic Devices for Manipulation of Long DNA Molecules. In: Schmid, A., Goel, S., Wang, W., Beiu, V., Carrara, S. (eds) Nano-Net. NanoNet 2009. Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering, vol 20. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-04850-0_20
Download citation
DOI: https://doi.org/10.1007/978-3-642-04850-0_20
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-04849-4
Online ISBN: 978-3-642-04850-0
eBook Packages: Computer ScienceComputer Science (R0)