Skip to main content

Exploring Contextual Models in Chemical Patent Search

  • Conference paper
Advances in Multidisciplinary Retrieval (IRFC 2010)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 6107))

Included in the following conference series:

  • 410 Accesses

Abstract

We explore the development of probabilistic retrieval models for integrating term statistics with entity search using multiple levels of document context to improve the performance of chemical patent search. A distributed indexing model was developed to enable efficient named entity search and aggregation of term statistics at multiple levels of patent structure including individual words, sentences, claims, descriptions, abstracts, and titles. The system can be scaled to an arbitrary number of compute instances in a cloud computing environment to support concurrent indexing and query processing operations on large patent collections.

The query processing algorithm for patent prior art search uses information extraction techniques to identify candidate entities and distinctive terms from the query patent’s title, abstract, description, and claim sections. Structured queries integrating terms and entities in context are automatically generated to test the validity of each section of potentially relevant patents.

The system was deployed across 15 Amazon Web Services (AWS) Elastic Cloud Compute (EC2) instances to support efficient indexing and query processing of the relatively large 100G+ collection of chemical patent documents. We evaluated several retrieval models for integrating statistics of candidate entities with term statistics at multiple levels of patent structure to identify relevant patents for prior art search. Our top performing retrieval model integrating contextual evidence from multiple levels of patent structure resulted in bpref measurements of 0.8929 for the prior art search task, exceeding the top results reported from the 2009 TREC Chemistry track.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Lupu, M., Piroi, F., Tait, J.: Overview of the TREC 2009 Chemical IR Track. In: The Eighteenth Text REtrieval Conference Proceedings (TREC 2009), Gaithersburg, Maryland (2009)

    Google Scholar 

  2. Adams, S.: The text, the full text and nothing but the text: Part 1 – Standards for creating textual information in patent documents and general search implications. In: World Patent Information, vol. 32, pp. 22–29. Elsevier Ltd., Amsterdam (2010)

    Google Scholar 

  3. Fujii, Atsushi, Iwayama, M., Kando, N.: Introduction to the special issue on patent processing. Information Processing and Management 43, 149–1153 (2007)

    Article  Google Scholar 

  4. Urbain, J., Frieder, O., Goharian, N.: Probabilistic Passage Models for Semantic Search of Genomics Literature. Journal of the American Society of Information Science and Technology (2008)

    Google Scholar 

  5. Urbain, J., Frieder, O., Goharian, N.: A Dimensional Retrieval Model for Integrating Semantics and Statistical Evidence in Context for Genomics Literature Search. Computers in Biology and Medicine (2008)

    Google Scholar 

  6. Gray, J., Chaudhuri, S., Bosworth, A., Layman, A., Reichart, D., Venckatrao, M., Pells, F.: Data Cube: A Relational Aggregation Operator Generalizing Group-By, Cross-Tab, and Sub-Totals. Data Mining and Knowledge Discovery 1(1) (1997)

    Google Scholar 

  7. Kimball, R.: The Data Warehouse Toolkit: Practical Techniques for Building Dimensional Data Warehouses. John Wiley, Ralph (1996)

    Google Scholar 

  8. Amazon Web Services, http://aws.amazon.com/documentation/PubChem , National Center for Biotechnology Information (NCBI), http://pubchem.ncbi.nlm.nih.gov

  9. Porter, M.F.: An algorithm for suffix stripping. Program 14, 130–137 (1980)

    Google Scholar 

  10. Robertson, S., Walker, S.: Okapi/Keenbow at TREC-8, pp. 246–500. NIST Special Publication (2000)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Urbain, J., Frieder, O. (2010). Exploring Contextual Models in Chemical Patent Search. In: Cunningham, H., Hanbury, A., RĂ¼ger, S. (eds) Advances in Multidisciplinary Retrieval. IRFC 2010. Lecture Notes in Computer Science, vol 6107. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-13084-7_6

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-13084-7_6

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-13083-0

  • Online ISBN: 978-3-642-13084-7

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics