Abstract
We prove that the genome aliquoting problem, the problem of finding a recent polyploid ancestor of a genome, with breakpoint distance can be solved in polynomial time. We propose an aliquoting algorithm that is a 2-approximation for the genome aliquoting problem with double cut and join distance, improving upon the previous best solution to this problem, Feijão and Meidanis’ 4-approximation algorithm.
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Warren, R., Sankoff, D. (2010). Genome Aliquoting Revisited. In: Tannier, E. (eds) Comparative Genomics. RECOMB-CG 2010. Lecture Notes in Computer Science(), vol 6398. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-16181-0_1
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DOI: https://doi.org/10.1007/978-3-642-16181-0_1
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-16180-3
Online ISBN: 978-3-642-16181-0
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