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Mexican International Conference on Artificial Intelligence

MICAI 2010: Advances in Soft Computing pp 80–91Cite as

A Fast Fuzzy Cocke-Younger-Kasami Algorithm for DNA and RNA Strings Analysis

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Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 6438))

Abstract

In this paper we present a variation of the Cocke-Younger-Kasami algorithm (CYK algorithm for short) for the analysis of fuzzy free context languages applied to DNA strings. We propose a variation of the original CYK algorithm where we prove that the order of the new CYK algorithm is O(n). We prove that the new algorithm only use 2n-1 memory localities. We use a variation of the CYK algorithm, where the free context language can be fuzzy. The fuzzy context-free grammar (FCFG) is obtained from DNA and RNA sequences.

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Author information

Authors and Affiliations

  1. Centro de Investigación en Computación, Instituto Politécnico Nacional, Av. Juan de Dios, Bátiz s/n casi esq. Miguel Othón de Mendizábal. Unidad Profesional Adolfo López Mateos, Col. Nueva Industrial Vallejo Delegación Gustavo A. Madero, C.P 07738, México D.F.

    Herón Molina-Lozano

Authors
  1. Herón Molina-Lozano
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Editor information

Editors and Affiliations

  1. Centro de Investigación en Computación, Instituto Politécnico Nacional, , Av. Juan Dios Batiz, s/n, Zacatenco, 07738, Mexico City, México

    Grigori Sidorov

  2. Centro de Investigación en Matemáticas (CIMAT), Area de Computación, Callejón de Jalisco s/n, Mineral de Valenciana, Guanajuato, 36240, Guanajuato, México

    Arturo Hernández Aguirre

  3. Ciencias Computacionales, Instituto Nacional de Astrofísica, Optica y Electrónica (INAOE), Luis Enrique Erro No. 1, Santa María Tonantzintla, 72840, Puebla, México

    Carlos Alberto Reyes García

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Molina-Lozano, H. (2010). A Fast Fuzzy Cocke-Younger-Kasami Algorithm for DNA and RNA Strings Analysis. In: Sidorov, G., Hernández Aguirre, A., Reyes García, C.A. (eds) Advances in Soft Computing. MICAI 2010. Lecture Notes in Computer Science(), vol 6438. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-16773-7_7

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  • DOI: https://doi.org/10.1007/978-3-642-16773-7_7

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-16772-0

  • Online ISBN: 978-3-642-16773-7

  • eBook Packages: Computer ScienceComputer Science (R0)

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