Skip to main content

A Novel Method for Quantifying the Demethylation Potential of Environmental Chemical Pollutants

  • Conference paper
Advances in Computer Science, Environment, Ecoinformatics, and Education (CSEE 2011)

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 214))

  • 1752 Accesses

Abstract

We developed a novel method to quantify the demethylation epigenetic toxicity of pollutants. A hyper-methylated pEGFP-C3 plasmid eukaryotic expression vector was constructed and used to evaluate the epigenetic toxicity of aquatic pollutants samples from polluted coastal waters of Tianjin, China. The methylated pEGFP-C3 plasmid was transfected into HepG-2 cells and incubated with 5-aza-2-deoxycytidine at various concentrations. The HepG-2 cell line reporter gene vector was used to assess the epigenetic toxicity of heavy metal extracts from polluted marine waters, and shellfish samples. Results indicated that the demethylation ability of 5-aza-dC at doses between 0.0008 and 0.1 μM could be quantitatively detected. Nine of the 19 aquatic samples showed strong demethylation ability at values between 0.0064 and 0.0387 μM 5-AZA equivalents. A GFP reporter gene vector with a hyper-methylated CMV promoter was constructed, and a relatively sensitive response relationship between GFP gene expression and 5-AZA dose was observed, providing a novel method for quantifying the demethylation ability of pollutants.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Eriksen, T.A., Kadziola, A., Larsen, S.: Binding of cations in Bacillus subtilis phosphoribosyldiphosphate synthetase and their role in catalysis. Protein Sci. 11, 271–279 (2002)

    Article  Google Scholar 

  2. Zoref, E., Vries, A.D., Sperling, O.: Mutant feedback-resistant phosphoribosylpyrophosphate synthetase associated with purine overproduction and gout. Phosphoribosylpyrophosphate and purine metabolism in cultured fibroblasts. J. Clin. Invest. 56, 1093–1099 (1975)

    Article  Google Scholar 

  3. Becker, M.A., Smith, P.R., Taylor, W., Mustafi, R., Switzer, R.L.: The genetic and functional basis of purine nucleotide feedback-resistant phosphoribo sylpyro phosphate synthetase superactivity. J. Clin. Invest. 96, 2133–2141 (1995)

    Article  Google Scholar 

  4. Reichard, J.F., Schnekenburger, M., Puga, A.: Long term low-dose arsenic exposure induces loss of DNA methylation. Biochem. Biophys. Res. Commun. 352, 188–192 (2007)

    Article  Google Scholar 

  5. Olaharski, A.J., Rine, J., Marshall, B.L., et al.: The flavoring agent dihydrocoumarin reverses epigenetic silencing and inhibits sirtuin deacetylases. PLoS Genet. 1(6), e77 (2005)

    Article  Google Scholar 

  6. Birnbaum, L.S., Fenton, S.E.: Cancer and developmental exposure to endocrine disruptors. Environ. Health Perspect. 111, 389–394 (2003)

    Article  Google Scholar 

  7. Salnikow, K., Zhitkovich, A.: Genetic and epigenetic mechanisms in metal carcinogenesis and cocarcinogenesis: nickel, arsenic, and chromium. Chem. Res. Toxicol. 21, 28–44 (2008)

    Article  Google Scholar 

  8. Tang, W.Y., Newbold, R., Mardilovich, K., et al.: Persistent hypomethylation in the promoter of nucleosomal binding protein 1 (Nsbp1) correlates with overexpression of Nsbp1 in mouse uteri neonatally exposed to diethylstilbestrol or genistein. Endocrinology 149, 5922–5931 (2008)

    Article  Google Scholar 

  9. Reik, W., Dean, W., Walter, J.: Epigenetic reprogramming in mammalian development. Science 293, 1089–1093 (2001)

    Article  Google Scholar 

  10. Bombail, V., Moggs, J.G., Orphanides, G.: Perturbation of epigenetic status by toxicants. Toxicol. Lett. 149, 51–58 (2004)

    Article  Google Scholar 

  11. Feil, R.: Environmental and nutritional effects on the epigenetic regulation of genes. Mutat. Res. 600, 46–57 (2006)

    Article  Google Scholar 

  12. Wu, C., Morris, J.R.: Genes, genetics, and epigenetics: a correspondence. Science 293, 1103–1105 (2001)

    Article  Google Scholar 

  13. Feinberg, A.P., Ohlsson, R., Henikoff, S.: The epigenetic progenitor origin of human cancer. Nat. Rev. Genet. 7, 21–33 (2006)

    Article  Google Scholar 

  14. Suzuki, M.M., Bird, A.: DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet. 9, 465–476 (2008)

    Article  Google Scholar 

  15. Barreto, G., Schaefer, A., Marhold, J., et al.: Gadd45α promotes epigenetic gene activation by repair-mediated DNA demethylation. Nature 445, 671–675 (2007)

    Article  Google Scholar 

  16. Wade, P.A., Archer, T.K.: Epigenetics: environmental instructions for the genome. Environ. Health Perspect. 114, A140–A141 (2006)

    Article  Google Scholar 

  17. Schmelz, K., Sattler, N., Wagner, M., et al.: Induction of gene expression by 5-aza-2’-deoxycytidine in acute myeloid leukemia (AML) and myelodysplastic syndrome (MDS) but not epithelial cells by DNA-methylation-dependent and -independent mechanisms. Leukemia 19, 103–111 (2005)

    Google Scholar 

  18. Olaharski, A.J., Rine, J., Marshall, B.L., et al.: The flavoring agent dihydrocoumarin reverses epigenetic silencing and inhibits sirtuin deacetylases. PLoS Genet. 1, e77 (2005)

    Article  Google Scholar 

  19. Appanah, R., Dickerson, D.R., Goyal, P., et al.: An unmethylated 3’ promoter-proximal region is required for efficient transcription initiation. PLoS Genet. 3, e27 (2007)

    Article  Google Scholar 

  20. Okochi-Takada, E., Ichimura, S., Kaneda, A., et al.: Establishment of a detection system for demethylating agents using an endogenous promoter CpG island. Mutat. Res. 568, 187–194 (2004)

    Article  Google Scholar 

  21. Wang, X., et al.: High-throughput assay of DNA methylation based on methylation-specific primer and SAGE. Biochem. Biophys. Res. Commun. 341, 749–754 (2006)

    Article  Google Scholar 

  22. Brunori, C., Ipolyi, I., Massanisso, P., Morabito, R.: New Trends in Sample Preparation Methods for the Determination of Organotin Compounds in Marine Matrices. Handbook Environment Chemistry, Part O(5), 51–70 (2006)

    Article  Google Scholar 

  23. Barreto, G., Schaefer, A., Marhold, J., et al.: Gadd45α promotes epigenetic gene activation by repair-mediated DNA demethylation. Nature 445, 671–675 (2007)

    Article  Google Scholar 

  24. Cheetham, S., Tang, M.J., Mesak, F., et al.: SPARC promoter hypermethylation in colorectal cancers can be reversed by 5-aza-2’deoxycytidine to increase SPARC expression and improve therapy response. Br. J. Cancer 98, 1810–1819 (2008)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Jiang, Y., Wang, X. (2011). A Novel Method for Quantifying the Demethylation Potential of Environmental Chemical Pollutants. In: Lin, S., Huang, X. (eds) Advances in Computer Science, Environment, Ecoinformatics, and Education. CSEE 2011. Communications in Computer and Information Science, vol 214. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-23321-0_10

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-23321-0_10

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-23320-3

  • Online ISBN: 978-3-642-23321-0

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics