Abstract
We developed a novel method to quantify the demethylation epigenetic toxicity of pollutants. A hyper-methylated pEGFP-C3 plasmid eukaryotic expression vector was constructed and used to evaluate the epigenetic toxicity of aquatic pollutants samples from polluted coastal waters of Tianjin, China. The methylated pEGFP-C3 plasmid was transfected into HepG-2 cells and incubated with 5-aza-2-deoxycytidine at various concentrations. The HepG-2 cell line reporter gene vector was used to assess the epigenetic toxicity of heavy metal extracts from polluted marine waters, and shellfish samples. Results indicated that the demethylation ability of 5-aza-dC at doses between 0.0008 and 0.1 μM could be quantitatively detected. Nine of the 19 aquatic samples showed strong demethylation ability at values between 0.0064 and 0.0387 μM 5-AZA equivalents. A GFP reporter gene vector with a hyper-methylated CMV promoter was constructed, and a relatively sensitive response relationship between GFP gene expression and 5-AZA dose was observed, providing a novel method for quantifying the demethylation ability of pollutants.
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References
Eriksen, T.A., Kadziola, A., Larsen, S.: Binding of cations in Bacillus subtilis phosphoribosyldiphosphate synthetase and their role in catalysis. Protein Sci. 11, 271–279 (2002)
Zoref, E., Vries, A.D., Sperling, O.: Mutant feedback-resistant phosphoribosylpyrophosphate synthetase associated with purine overproduction and gout. Phosphoribosylpyrophosphate and purine metabolism in cultured fibroblasts. J. Clin. Invest. 56, 1093–1099 (1975)
Becker, M.A., Smith, P.R., Taylor, W., Mustafi, R., Switzer, R.L.: The genetic and functional basis of purine nucleotide feedback-resistant phosphoribo sylpyro phosphate synthetase superactivity. J. Clin. Invest. 96, 2133–2141 (1995)
Reichard, J.F., Schnekenburger, M., Puga, A.: Long term low-dose arsenic exposure induces loss of DNA methylation. Biochem. Biophys. Res. Commun. 352, 188–192 (2007)
Olaharski, A.J., Rine, J., Marshall, B.L., et al.: The flavoring agent dihydrocoumarin reverses epigenetic silencing and inhibits sirtuin deacetylases. PLoS Genet. 1(6), e77 (2005)
Birnbaum, L.S., Fenton, S.E.: Cancer and developmental exposure to endocrine disruptors. Environ. Health Perspect. 111, 389–394 (2003)
Salnikow, K., Zhitkovich, A.: Genetic and epigenetic mechanisms in metal carcinogenesis and cocarcinogenesis: nickel, arsenic, and chromium. Chem. Res. Toxicol. 21, 28–44 (2008)
Tang, W.Y., Newbold, R., Mardilovich, K., et al.: Persistent hypomethylation in the promoter of nucleosomal binding protein 1 (Nsbp1) correlates with overexpression of Nsbp1 in mouse uteri neonatally exposed to diethylstilbestrol or genistein. Endocrinology 149, 5922–5931 (2008)
Reik, W., Dean, W., Walter, J.: Epigenetic reprogramming in mammalian development. Science 293, 1089–1093 (2001)
Bombail, V., Moggs, J.G., Orphanides, G.: Perturbation of epigenetic status by toxicants. Toxicol. Lett. 149, 51–58 (2004)
Feil, R.: Environmental and nutritional effects on the epigenetic regulation of genes. Mutat. Res. 600, 46–57 (2006)
Wu, C., Morris, J.R.: Genes, genetics, and epigenetics: a correspondence. Science 293, 1103–1105 (2001)
Feinberg, A.P., Ohlsson, R., Henikoff, S.: The epigenetic progenitor origin of human cancer. Nat. Rev. Genet. 7, 21–33 (2006)
Suzuki, M.M., Bird, A.: DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet. 9, 465–476 (2008)
Barreto, G., Schaefer, A., Marhold, J., et al.: Gadd45α promotes epigenetic gene activation by repair-mediated DNA demethylation. Nature 445, 671–675 (2007)
Wade, P.A., Archer, T.K.: Epigenetics: environmental instructions for the genome. Environ. Health Perspect. 114, A140–A141 (2006)
Schmelz, K., Sattler, N., Wagner, M., et al.: Induction of gene expression by 5-aza-2’-deoxycytidine in acute myeloid leukemia (AML) and myelodysplastic syndrome (MDS) but not epithelial cells by DNA-methylation-dependent and -independent mechanisms. Leukemia 19, 103–111 (2005)
Olaharski, A.J., Rine, J., Marshall, B.L., et al.: The flavoring agent dihydrocoumarin reverses epigenetic silencing and inhibits sirtuin deacetylases. PLoS Genet. 1, e77 (2005)
Appanah, R., Dickerson, D.R., Goyal, P., et al.: An unmethylated 3’ promoter-proximal region is required for efficient transcription initiation. PLoS Genet. 3, e27 (2007)
Okochi-Takada, E., Ichimura, S., Kaneda, A., et al.: Establishment of a detection system for demethylating agents using an endogenous promoter CpG island. Mutat. Res. 568, 187–194 (2004)
Wang, X., et al.: High-throughput assay of DNA methylation based on methylation-specific primer and SAGE. Biochem. Biophys. Res. Commun. 341, 749–754 (2006)
Brunori, C., Ipolyi, I., Massanisso, P., Morabito, R.: New Trends in Sample Preparation Methods for the Determination of Organotin Compounds in Marine Matrices. Handbook Environment Chemistry, Part O(5), 51–70 (2006)
Barreto, G., Schaefer, A., Marhold, J., et al.: Gadd45α promotes epigenetic gene activation by repair-mediated DNA demethylation. Nature 445, 671–675 (2007)
Cheetham, S., Tang, M.J., Mesak, F., et al.: SPARC promoter hypermethylation in colorectal cancers can be reversed by 5-aza-2’deoxycytidine to increase SPARC expression and improve therapy response. Br. J. Cancer 98, 1810–1819 (2008)
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Jiang, Y., Wang, X. (2011). A Novel Method for Quantifying the Demethylation Potential of Environmental Chemical Pollutants. In: Lin, S., Huang, X. (eds) Advances in Computer Science, Environment, Ecoinformatics, and Education. CSEE 2011. Communications in Computer and Information Science, vol 214. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-23321-0_10
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DOI: https://doi.org/10.1007/978-3-642-23321-0_10
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