Abstract
This paper presents an advanced search module for bibliography retrieval developed within the CHRONIOUS European IP project. The developed search module is specifically targeted to clinicians and healthcare practitioners searching for documents related to Chronic Obstructive Pulmonary Disease (COPD) and Chronic Kidney Disease (CKD). To this aim, the presented tool exploits two pathology-specific ontologies that allow focused document indexing and retrieval. Besides the search module, an enrichment tool is provided to maintain and to keep up-to date such as ontologies. In addition link with the terms of the MeSH (Medical Subject Heading) thesaurus has been provided to guarantee the coverage with the general certified medical terms and multilingual capabilities.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Schneider, L., Brochhausen, M.: The CHRONIOUS Ontology Suite: Methodology and Design Principles. In: Proceedings of the International Conference on Biomedical Ontology, July 26-30. University at Buffalo, NY (2011)
Medical Subject Headings (MeSH), http://www.nlm.nih.gov/mesh
Brochhausen, M., Spear, A.D., Cocos, C., Weiler, G., Martin, V., Anguita, A., Stenzhorn, H., Daskalaki, E., Schera, F., Schwarz, U., Sfakianakis, S., Kiefer, S., Doerr, M., Graf, N., Tsiknakis, M.: The ACGT Master Ontology and Its Applications - Towards an Ontology-Driven Cancer Research and Management System. Journal of Biomedical Informatics, E-published ahead of print (2010), doi:10.1016/j.jbi, 04.008
Smith, B., Ceusters, W., Klagges, B., Kohler, J., Kumar, A., Lomax, J., Mungall, C.J., Neuhaus, F., Rector, A., Rosse, C.: Relations in Biomedical Ontologies. Genome Biology 6, R46 (2005)
The Open Biological and Biomedical Ontologies Foundry, http://www.obofoundry.org/
The GATE framework, http://gate.ac.uk/
OntoRoot Gazetteer, http://gate.ac.uk/sale/tao/splitch13.html#sec:gazetteers:ontoRootGaz
Text2Onto project, http://code.google.com/p/text2onto/
WordNet, http://wordnet.princeton.edu/
JENA – A Semantic Web Framework for Java, http://jena.sourceforge.net/
OWL 2 Web Ontology Language Primer W3C Recommendation, October 27 (2009), http://www.w3.org/TR/owl2-primer/
Spear, A.: Ontology for the Twenty First Century: An Introduction with Recommendations, BFO manual (2006)
Chronic obstructive pulmonary disease (COPD) ontology, http://www.ifomis.org/chronious/copd
Chronic kidney disease (CKD) ontology, http://www.ifomis.org/chronious/ckd
Middle Layer Ontology for Clinical Care (MLOCC), http://www.ifomis.org/chronious/mlocc
Van Assem, M., Malaisé, V., Miles, A., Schreiber, G.: A Method to Convert Thesauri to SKOS. In: Sure, Y., Domingue, J. (eds.) ESWC 2006. LNCS, vol. 4011, pp. 95–109. Springer, Heidelberg (2006)
The OWL API, http://owlapi.sourceforge.net/
van Rijsbergen, C.J.: Information Retrieval, 2nd edn. Butterworth (1979)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2011 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Kiefer, S. et al. (2011). An Ontology-Driven Search Module for Accessing Chronic Pathology Literature. In: Meersman, R., Dillon, T., Herrero, P. (eds) On the Move to Meaningful Internet Systems: OTM 2011 Workshops. OTM 2011. Lecture Notes in Computer Science, vol 7046. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-25126-9_50
Download citation
DOI: https://doi.org/10.1007/978-3-642-25126-9_50
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-25125-2
Online ISBN: 978-3-642-25126-9
eBook Packages: Computer ScienceComputer Science (R0)