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6th International Conference on Practical Applications of Computational Biology & Bioinformatics pp 189–196Cite as

Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies

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Part of the book series: Advances in Intelligent and Soft Computing ((AINSC,volume 154))

Abstract

AIBench is a Java application framework for building translational software in Biomedicine. In this paper, we show how to use this framework to develop rich user interfaces in next-generation sequencing (NGS) experiments. In particular, we present PileLineGUI, a desktop environment for handling genome position files in next-generation studies based on the PileLine command-line toolbox.

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References

  1. The International Cancer Genome Consortium. Nature 464(7291), 993–998 (2010)

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  2. Glez-Peña, D., Gómez-López, G., Reboiro-Jato, M., Fdez-Riverola, F., Gómez-Pisano, D.: PileLine: a toolbox to handle genome position information in next-generation sequencing studies. BMC Bioinformatics 12, 31 (2011)

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  3. Glez-Peña, D., López-Fernández, H., Reboiro-Jato, M., Méndez, J.R., Fdez-Riverola, F.: A Java application framework for scientific software development. John Wiley & Sons, Ltd. (2011)

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  4. López-Fernández, H., Glez-Peña, D., Reboiro-Jato, M., Gómez-López, G., Gómez Pisano, D., Fdez-Riverola, F.: PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies. Nucleic Acids Research Web Server (1-5) (2011)

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Author information

Authors and Affiliations

  1. ESEI: Escuela Superior de Ingeniería Informática, University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004, Ourense, Spain

    Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato & Florentino Fdez-Riverola

  2. Bioinformatics Unit (UBio), Biología Estructural y Biocomputación, Centro Nacional de Investigaciones Oncológicas (CNIO), Madrid, Spain

    Gonzalo Gómez-López & David G. Pisano

Authors
  1. Hugo López-Fernández
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  2. Daniel Glez-Peña
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  3. Miguel Reboiro-Jato
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  4. Gonzalo Gómez-López
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  5. David G. Pisano
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  6. Florentino Fdez-Riverola
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Corresponding author

Correspondence to Hugo López-Fernández .

Editor information

Editors and Affiliations

  1. , Dep. Informática / CCTC, Universidade do Minho, Largo do Paco, Braga, 4710 - 057, Portugal

    Miguel P. Rocha

  2. European Bioinformatics Institute, Wellcome Trust Genome Campus, EMBL Outstation - Hinxton, Hinxton, CB10 1SD, United Kingdom

    Nicholas Luscombe

  3. , Department of Informatics, University of Vigo, Edificio Politécnico. Campus Universitario As Lagoas s/n, Ourense, 32004, Spain

    Florentino Fdez-Riverola

  4. Faculty of Science, Department of Computing Science, University of Salamanca, Plaza de la Merced S/N, Salamanca, 37008, Spain

    Juan M. Corchado Rodríguez

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© 2012 Springer-Verlag Berlin Heidelberg

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Cite this paper

López-Fernández, H., Glez-Peña, D., Reboiro-Jato, M., Gómez-López, G., Pisano, D.G., Fdez-Riverola, F. (2012). Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies. In: Rocha, M., Luscombe, N., Fdez-Riverola, F., Rodríguez, J. (eds) 6th International Conference on Practical Applications of Computational Biology & Bioinformatics. Advances in Intelligent and Soft Computing, vol 154. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-28839-5_22

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  • DOI: https://doi.org/10.1007/978-3-642-28839-5_22

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-28838-8

  • Online ISBN: 978-3-642-28839-5

  • eBook Packages: EngineeringEngineering (R0)

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