Abstract
EULAG (Eulerian/semi-Lagrangian fluid solver) is an established computational model developed by the group headed by Piotr K. Smolarkiewicz for simulating thermo-fluid flows across a wide range of scales and physical scenarios. This paper presents perspectives of the EULAG parallelization based on the MPI, OpenMP, and OpenCL standards. We focus on development of computational kernels of the EULAG model. They consist of the most time-consuming calculations of the model, which are: laplacian algorithm (laplc) and multidimensional positive definite advection transport algorithm (MPDATA).
The first challenge of our work was parallelization of the laplc subroutine using MPI across nodes and OpenMP within nodes, on the BlueGene/P supercomputer located in the Bulgarian Supercomputing Center. The second challenge was to accelerate computations of the Eulag model using modern GPUs. We discuss the scalability issue for the OpenCL implementation of the linear part of MPDATA on ATI Radeon HD 5870 GPU with AMD Phenom II X4 CPU, and NVIDIA Tesla C1060 GPU with AMD Phenom II X4 CPU.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
AMD Corporation: ATI Radeon HD 5870 Feature Summary, http://www.amd.com/
Dokken, T., Hagen, T.R., Hjelmervik, J.M.: An Introduction to General-Purpose Computing on Programmable Graphics Hardware. In: Geometric Modelling, Numerical Simulation, and Optimization: Applied Mathematics at SINTEF, pp. 123â161. Springer, Heidelberg (2007)
Eulag Research Model for Geophysical Flows, http://www.eulag.com/
IBM Blue Gene Team: Overview of the IBM Blue Gene/P project. IBM Journal of Research and Development 52, 199â220 (2008)
Khronos OpenCL Working Group: The OpenCL C++ Wrapper API, http://www.khronos.org
Khronos OpenCL Working Group: The OpenCL Specification, http://www.khronos.org
Lindholm, E., Nickolls, J., Oberman, S., Montrym, J.: NVIDIA Tesla: A Unified Graphics and Computing Architecture. IEEE Micro 28, 39â55 (2008)
Smolarkiewicz, P., Szmelter, J.: MPDATA: An edge-based unstructured-grid formulation. Elsevier Journal of Computational Physics 206, 624â649 (2005)
Sviercoski, R., Winter, C., Warrick, A.: Analytical approximation for the generalized Laplace equation with step function coefficient. J. Appl. Math. 68, 1268â1281 (2008)
Tsuchiyama, R., Nakamura, N., Iizuka, T., Asahara, A., Miki, S.: The OpenCL Programming Book. Fixstars Corporation (2010)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2012 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Wyrzykowski, R., Rojek, K., Szustak, Ć. (2012). Using Blue Gene/P and GPUs to Accelerate Computations in the EULAG Model. In: Lirkov, I., Margenov, S., WaĆniewski, J. (eds) Large-Scale Scientific Computing. LSSC 2011. Lecture Notes in Computer Science, vol 7116. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-29843-1_77
Download citation
DOI: https://doi.org/10.1007/978-3-642-29843-1_77
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-29842-4
Online ISBN: 978-3-642-29843-1
eBook Packages: Computer ScienceComputer Science (R0)