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Analytics Approaches for the Era of 10,000* Genomes *and Counting

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Bioinformatics Research and Applications (ISBRA 2012)

Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 7292))

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Abstract

What does it mean to make data available in a world where not everyone is a bioinformatician, but anyone can sequence a genome? As low-cost sequencing democratizes genome sequencing, it is also democratizing data analysis, with predictably uneven results. Can analytics approaches save us from everything from poorly documented analysis protocols to increasingly compressed and confusing visualizations?

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References

  1. Morrison, S.S., Williams, T., Cain, A.A., Froelich, B., Taylor, C., Verner-Jeffreys, D., Hartnell, R., Oliver, J.D., Baker-Austin, C., Gibas, C.J.: Pyrosequencing-based comparative genome analysis of Vibrio vulnificus environmental isolates. PLoS One (in review)

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  2. Cain, A.A., Kosara, R., Gibas, C.J.: GenoSets: Visual Analytic Methods for Comparative Genomics. PLoS One (in review)

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Author information

Authors and Affiliations

  1. Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, North Carolina, USA

    Cynthia J. Gibas

Authors
  1. Cynthia J. Gibas
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Editor information

Editors and Affiliations

  1. Departments of Bioengineering and Electrical Engineering, University of Texas at Dallas, 75080, Richardson, TX, USA

    Leonidas Bleris

  2. Department of Computer Science and Engineering, University of Connecticut, 06269, Storrs, CT, USA

    Ion Măndoiu

  3. Department of Biological Sciences, Carnegie Mellon University, 15213, Pittsburgh, PA, USA

    Russell Schwartz

  4. School of Information Science and Engineering, Central South University, 410083, Changsha, China

    Jianxin Wang

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© 2012 Springer-Verlag Berlin Heidelberg

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Gibas, C.J. (2012). Analytics Approaches for the Era of 10,000* Genomes *and Counting. In: Bleris, L., Măndoiu, I., Schwartz, R., Wang, J. (eds) Bioinformatics Research and Applications. ISBRA 2012. Lecture Notes in Computer Science(), vol 7292. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-30191-9_10

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  • DOI: https://doi.org/10.1007/978-3-642-30191-9_10

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-30190-2

  • Online ISBN: 978-3-642-30191-9

  • eBook Packages: Computer ScienceComputer Science (R0)

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