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Unsupervised Learning of Shape Complexity: Application to Brain Development

  • Conference paper
Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data (STIA 2012)

Abstract

This paper presents a framework for unsupervised learning of shape complexity in the developing brain. It learns the complexity in different brain structures by applying several shape complexity measures to each individual structure, and then using feature selection to select the measures that best describe the changes in complexity of each structure. Then, feature selection is applied again to assign a score to each structure, in order to find which structure can be a good biomarker of brain development. This study was carried out using T2-weighted MR images from 224 premature neonates (the age range at the time of scan was 26.7 to 44.86 weeks post-menstrual age). The advantage of the proposed framework is that one can extract as many ROIs as desired, and the framework automatically finds the ones which can be used as good biomarkers. However, the example application focuses on neonatal brain image data, the proposed framework for combining information from multiple measures may be applied more generally to other populations and other forms of imaging data.

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References

  1. Zilles, K., Armstrong, E., Schleicher, A., Kretschmann, H.J.: The human pattern of gyrification in the cerebral cortex. Anatomy and Embryology-Berlin 179(2), 173–179 (1988)

    Article  Google Scholar 

  2. Batchelor, P.G., Castellano Smith, A.D., Hill, D.L.G., Hawkes, D.J., Cox, T.C.S., Dean, A.F.: Measures of folding applied to the development of the human fetal brain. IEEE Transactions on Medical Imaging 21(8), 953–965 (2002)

    Article  Google Scholar 

  3. Luders, E., Narr, K.L., Thompson, P.M., Rex, D.E., Jancke, L., Steinmetz, H., Toga, A.W.: Gender differences in cortical complexity. Nature Neuroscience 7(8), 799–800 (2004)

    Article  Google Scholar 

  4. Awate, S.P., Win, L., Yushkevich, P.A., Schultz, R.T., Gee, J.C.: 3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008, Part I. LNCS, vol. 5241, pp. 559–567. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  5. Van Essen, D.C., Drury, H.A.: Structural and functional analyses of human cerebral cortex using a surface-based atlas. Journal of Neuroscience 17(18), 7079–7102 (1997)

    Google Scholar 

  6. Srinivasan, L., Dutta, R., Counsell, S.J., Allsop, J.M., Boardman, J.P., Rutherford, M.A., Edwards, A.D.: Quantification of deep gray matter in preterm infants at term-equivalent age using manual volumetry of 3-tesla magnetic resonance images. Pediatrics 119(4), 759–765 (2007)

    Article  Google Scholar 

  7. Ball, G., Boardman, J., Rueckert, D., Aljabar, P., Arichi, T., Merchant, N., Gousias, I., Edwards, A., Counsell, S.: The effect of preterm birth on thalamic and cortical development. Cerebral Cortex (2011)

    Google Scholar 

  8. Smith, S.M.: Fast robust automated brain extraction. Human Brain Mapping 17, 143–155 (2002)

    Article  Google Scholar 

  9. Tustison, N.J., Avants, B.B., Cook, P.A., Yuanjie, Z., Egan, A., Yushkevich, P.A., Gee, J.C.: N4ITK: Improved N3 Bias Correction. IEEE Transactions on Medical Imaging 29, 1310–1320 (2010)

    Article  Google Scholar 

  10. Gousias, I.S., Hammers, A., Counsell, S.J., Rueckert, D., Edwards, A.D.: A new resource for imaging research in neonates: Manually defined brain atlases. Acta Paediatrica 98, 146–147 (2009)

    Google Scholar 

  11. Serag, A., Aljabar, P., Ball, G., Counsell, S., Boardman, J., Rutherford, M., Edwards, A., Hajnal, J., Rueckert, D.: Construction of a consistent high-definition spatio-temporal atlas of the developing brain using adaptive kernel regression. NeuroImage 59(3), 2255–2265 (2012)

    Article  Google Scholar 

  12. Serag, A., Aljabar, P., Counsell, S.J., Boardman, J.P., Hajnal, J.V., Rueckert, D.: Lisa: Longitudinal image registration via spatio-temporal atlases. In: The 9th IEEE International Symposium on Biomedical Imaging (2012)

    Google Scholar 

  13. Heckemann, R.A., Hajnal, J.V., Aljabar, P., Rueckert, D., Hammers, A.: Automatic anatomical brain mri segmentation combining label propagation and decision fusion. Neuroimage 33(1), 115–126 (2006)

    Article  Google Scholar 

  14. Lorensen, W.E., Cline, H.E.: Marching cubes: A high resolution 3D surface construction algorithm. Computer Graphics 21(4), 163–169 (1987)

    Article  Google Scholar 

  15. He, X., Cai, D., Niyogi, P.: Laplacian score for feature selection. In: NIPS (2005)

    Google Scholar 

  16. Rueckert, D., Sonoda, L.I., Hayes, C., Hill, D.L.G., Leach, M.O., Hawkes, D.J.: Nonrigid registration using free-form deformations: application to breast MR images. IEEE Transactions on Medical Imaging 18(8), 712–721 (1999)

    Article  Google Scholar 

  17. Rutherford, M.: MRI of the Neonatal Brain. Saunders Ltd. (2001)

    Google Scholar 

  18. Limperopoulos, C., Soul, J.S., Gauvreau, K., Huppi, P.S., Warfield, S.K., Bassan, H., Robertson, R.L., Volpe, J.J., du Plessis, A.J.: Late gestation cerebellar growth is rapid and impeded by premature birth. Pediatrics 115(3), 688–695 (2005)

    Article  Google Scholar 

  19. Ment, L.R., Hirtz, D., Huppi, P.S.: Imaging biomarkers of outcome in the developing preterm brain. Lancet Neurology 8(11), 1042–1055 (2009)

    Article  Google Scholar 

  20. Engle, W.A.: A. A. of Pediatrics Committee on Fetus, and Newborn, Age terminology during the perinatal period. Pediatrics 114(5), 1362–1364 (2004)

    Article  Google Scholar 

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Serag, A. et al. (2012). Unsupervised Learning of Shape Complexity: Application to Brain Development. In: Durrleman, S., Fletcher, T., Gerig, G., Niethammer, M. (eds) Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data. STIA 2012. Lecture Notes in Computer Science, vol 7570. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-33555-6_8

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  • DOI: https://doi.org/10.1007/978-3-642-33555-6_8

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-33554-9

  • Online ISBN: 978-3-642-33555-6

  • eBook Packages: Computer ScienceComputer Science (R0)

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