Abstract
Genetic and evolutionary algorithms have been used to find clusters in data with success. Unfortunately, evolutionary clustering suffers from the high computational costs when it comes to fitness function evaluation. The GPU computing is a recent programming and development paradigm introducing high performance parallel computing to general audience. This study presents a design, implementation, and evaluation of a genetic algorithm for density based clustering for the nVidia CUDA platform.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Alves, V., Campello, R., Hruschka, E.: Towards a fast evolutionary algorithm for clustering. In: Yen, G.G., Lucas, S.M., Fogel, G., Kendall, G., Salomon, R., Zhang, B.T., Coello, C.A.C., Runarsson, T.P. (eds.) Proc. of the 2006 IEEE Congress on Evolutionary Computation, July 16-21, pp. 1776–1783. IEEE Press, Vancouver (2006)
Bandyopadhyay, S.: Genetic algorithms for clustering and fuzzy clustering. Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery 1(6), 524–531 (2011)
Bandyopadhyay, S., Maulik, U.: Genetic clustering for automatic evolution of clusters and application to image classification. Pattern Rec. 35(6), 1197–1208 (2002)
Böhm, C., Noll, R., Plant, C., Wackersreuther, B.: Density-based clustering using graphics processors. In: Proc. of the 18th ACM Conf. on Information and Knowledge Management, CIKM 2009, pp. 661–670. ACM, New York (2009)
Brecheisen, S., Kriegel, H.-P., Pfeifle, M.: Parallel Density-Based Clustering of Complex Objects. In: Ng, W.-K., Kitsuregawa, M., Li, J., Chang, K. (eds.) PAKDD 2006. LNCS (LNAI), vol. 3918, pp. 179–188. Springer, Heidelberg (2006)
Das, S., Abraham, A., Konar, A.: Automatic Hard Clustering Using Improved Differential Evolution Algorithm. In: Das, S., Abraham, A., Konar, A. (eds.) Metaheuristic Clustering. SCI, vol. 178, pp. 137–174. Springer, Heidelberg (2009)
Das, S., Abraham, A., Konar, A.: Metaheuristic Pattern Clustering – An Overview. In: Das, S., Abraham, A., Konar, A. (eds.) Metaheuristic Clustering. SCI, vol. 178, pp. 1–62. Springer, Heidelberg (2009)
Desell, T.J., Anderson, D.P., Magdon-Ismail, M., Newberg, H.J., Szymanski, B.K., Varela, C.A.: An analysis of massively distributed evolutionary algorithms. In: IEEE Congress on Evolutionary Computation, pp. 1–8. IEEE (2010)
Dunn, J.C.: Well separated clusters and optimal fuzzy-partitions. Journal of Cybernetics 4, 95–104 (1974)
Halkidi, M., Batistakis, Y., Vazirgiannis, M.: On clustering validation techniques. J. Intell. Inf. Syst. 17, 107–145 (2001)
Harish, P., Narayanan, P.J.: Accelerating Large Graph Algorithms on the GPU Using CUDA. In: Aluru, S., Parashar, M., Badrinath, R., Prasanna, V.K. (eds.) HiPC 2007. LNCS, vol. 4873, pp. 197–208. Springer, Heidelberg (2007)
Hruschka, E.R., Campello, R.J.G.B., Freitas, A.A., De Carvalho, A.C.P.L.F.: A survey of evolutionary algorithms for clustering. Trans. Sys. Man Cyber. Part C 39, 133–155 (2009)
Karypis, G., Han, E.H., Kumar, V.: Chameleon: hierarchical clustering using dynamic modeling. Computer 32(8), 68–75 (1999)
Kriegel, H.P., Kröger, P., Sander, J., Zimek, A.: Density-based clustering. Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery 1(3), 231–240 (2011)
Krömer, P., Platos, J., Snasel, V.: Differential evolution for the linear ordering problem implemented on cuda. In: Smith, A.E. (ed.) Proceedings of the 2011 IEEE Congress on Evolutionary Computation, June 5-8. IEEE Computational Intelligence Society, pp. 790–796. IEEE Press, New Orleans (2011)
Krömer, P., Snásel, V., Platos, J., Abraham, A.: Many-threaded implementation of differential evolution for the cuda platform. In: Krasnogor, N., Lanzi, P.L. (eds.) GECCO, pp. 1595–1602. ACM (2011)
Langdon, W.B., Banzhaf, W.: A SIMD Interpreter for Genetic Programming on GPU Graphics Cards. In: O’Neill, M., Vanneschi, L., Gustafson, S., Esparcia Alcázar, A.I., De Falco, I., Della Cioppa, A., Tarantino, E. (eds.) EuroGP 2008. LNCS, vol. 4971, pp. 73–85. Springer, Heidelberg (2008)
Liu, Y., Li, Z., Xiong, H., Gao, X., Wu, J.: Understanding of internal clustering validation measures. In: 2010 IEEE 10th Int. Conf. on Data Mining (ICDM), pp. 911–916 (December 2010)
Luo, L., Wong, M., Hwu, W.M.: An effective gpu implementation of breadth-first search. In: Proc. of the 47th Design Automation Conf., DAC 2010, pp. 52–55. ACM, New York (2010)
Pospichal, P., Jaros, J., Schwarz, J.: Parallel Genetic Algorithm on the CUDA Architecture. In: Di Chio, C., Cagnoni, S., Cotta, C., Ebner, M., Ekárt, A., Esparcia-Alcazar, A.I., Goh, C.-K., Merelo, J.J., Neri, F., Preuß, M., Togelius, J., Yannakakis, G.N. (eds.) EvoApplicatons 2010, Part I. LNCS, vol. 6024, pp. 442–451. Springer, Heidelberg (2010)
Robilliard, D., Marion, V., Fonlupt, C.: High performance genetic programming on gpu. In: Proc. of the 2009 Workshop on Bio-inspired Algorithms for Distributed Systems, BADS 2009, pp. 85–94. ACM, New York (2009)
de Veronese, L., Krohling, R.: Differential evolution algorithm on the gpu with c-cuda. In: 2010 IEEE Congress on Evolutionary Computation (CEC), pp. 1–7 (July 2010)
Zhu, W., Li, Y.: Gpu-accelerated differential evolutionary markov chain monte carlo method for multi-objective optimization over continuous space. In: Proceeding of the 2nd Workshop on Bio-inspired Algorithms for Distributed Systems, BADS 2010, pp. 1–8. ACM, New York (2010)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2012 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Krömer, P., Platoš, J., Snášel, V. (2012). GPU Accelerated Genetic Clustering. In: Bui, L.T., Ong, Y.S., Hoai, N.X., Ishibuchi, H., Suganthan, P.N. (eds) Simulated Evolution and Learning. SEAL 2012. Lecture Notes in Computer Science, vol 7673. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-34859-4_41
Download citation
DOI: https://doi.org/10.1007/978-3-642-34859-4_41
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-34858-7
Online ISBN: 978-3-642-34859-4
eBook Packages: Computer ScienceComputer Science (R0)