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An Improved 3D Edge Surface Tracking Algorithm Based on 3D Fractional-Order Differentiation within Confocal Microscopy Images

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Book cover Intelligence Science and Big Data Engineering (IScIDE 2013)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 8261))

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Abstract

Fractional-order differentiation enhances the image nonlinearly, but only has been applied in the 2D image. The 2D fractional differentiation operator is extended to 3D and the 3D fractional differentiation discrete filtering masks are deduced. The 3D fractional differentiation is implemented to improve the traditional 3D image edge surface tracking algorithm in two aspects. Firstly, the 3D data fields of neuron slices are enhanced by the 3D fractional differentiation, ensures more detailed structures of edge surfaces with low contrast are extracted. Then integral-order gradient is modified by the fractional differentiation to get more 3D detailed structures. The proposed method has been applied to 3D confocal microscopy images, and more 3D detail structures of neuron are tracked compared to the traditional 3D edge surface tracking algorithm.

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References

  1. Dima, A., Scholz, M., Obermayer, K.: Automatic segmentation and skeletonization of neurons from confocal microscopy images based on the 3-D wavelet transform. IEEE Transactions on Image Processing 11(7), 790–801 (2002)

    Article  Google Scholar 

  2. Konstantinidis, I., Santamaría-Pang, A., Kakadiaris, I.A.: Frames-based denoising in 3D confocal microscopy imaging. In: 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005. IEEE (2005)

    Google Scholar 

  3. Al-Kofahi, K.A., et al.: Rapid automated three-dimensional tracing of neurons from confocal image stacks. IEEE Transactions on Information Technology in Biomedicine 6(2), 171–187 (2002)

    Article  Google Scholar 

  4. Bucher, D., et al.: Correction methods for three-dimensional reconstructions from confocal images: I. Tissue shrinking and axial scaling. Journal of neuroscience methods 100(1), 135–143 (2000)

    Article  Google Scholar 

  5. Cai, H., et al.: Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks. NeuroImage 32(4), 1608 (2006)

    Article  Google Scholar 

  6. Lorensen, W.E., Cline, H.E.: Marching cubes: A high resolution 3D surface construction algorithm. ACM Siggraph Computer Graphics 21(4) (1987)

    Google Scholar 

  7. Wang, L., et al.: Template-matching approach to edge detection of volume data. In: Proceedings of the International Workshop on Medical Imaging and Augmented Reality. IEEE (2001)

    Google Scholar 

  8. Wang, L., et al.: A computational framework for approximating boundary surfaces in 3-D biomedical images. IEEE Transactions on nformation Technology in Biomedicine 11(6), 668–682 (2007)

    Article  Google Scholar 

  9. Yu, M., et al.: A novel algorithm for tracking step like edge surfaces within 3D images. Journal of Computer-Aided Design&Computer Graphics 19(3), 329–333 (2007)

    Google Scholar 

  10. Yu, M., et al.: An automatic surface extraction for volume visualization. In: 2011 Third International Conference on easuring Technology and Mechatronics Automation (ICMTMA), vol. 1. IEEE (2011)

    Google Scholar 

  11. Oldham, K.B., Spanier, J.: The fractional calculus, vol. 17 (1974)

    Google Scholar 

  12. Tenreiro Machado, J.A.: Analysis and design of fractional-order digital control systems. Systems Analysis Modelling Simulation 27(2-3), 107–122 (1997)

    MATH  Google Scholar 

  13. Pu, Y.F., et al.: Fractional differential approach to detecting textural features of digital image and its fractional differential filter implementation. Science in China Series F: Information Sciences 51(9), 1319–1339 (2008)

    Article  MATH  MathSciNet  Google Scholar 

  14. Yi-Fei, P.: Application of fractional differential approach to digital image processing. Journal of Sichuan University (Engineering Science Edition) 3, 022 (2007)

    Google Scholar 

  15. Zhuzhong, Y., et al.: Image Enhancement Based on Fractional Differentiations. Journal of Computer Aided Design & Computer Graphics 20(3), 343–348 (2008)

    Google Scholar 

  16. Pu, Y.-F., Zhou, J.-L., Yuan, X.: Fractional differential mask: a fractional differential-based approach for multiscale texture enhancement. IEEE Transactions on Image Processing 19(2), 491–511 (2010)

    Article  MathSciNet  Google Scholar 

  17. Gilboa, G., Sochen, N., Zeevi, Y.Y.: Image enhancement and denoising by complex diffusion processes. IEEE Transactions on Pattern Analysis and Machine Intelligence 26(8), 1020–1036 (2004)

    Article  Google Scholar 

  18. Zesheng, T.: The visualization of three dimensional data fields, vol. 12. Tsinghua University Press (1999)

    Google Scholar 

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© 2013 Springer-Verlag Berlin Heidelberg

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Ma, Y., Zhang, Y., Wang, L. (2013). An Improved 3D Edge Surface Tracking Algorithm Based on 3D Fractional-Order Differentiation within Confocal Microscopy Images. In: Sun, C., Fang, F., Zhou, ZH., Yang, W., Liu, ZY. (eds) Intelligence Science and Big Data Engineering. IScIDE 2013. Lecture Notes in Computer Science, vol 8261. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-42057-3_63

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  • DOI: https://doi.org/10.1007/978-3-642-42057-3_63

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-42056-6

  • Online ISBN: 978-3-642-42057-3

  • eBook Packages: Computer ScienceComputer Science (R0)

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